論文

• Arzuba Akter, Tadasuke Ooka, Yasuhiro Gotoh, Seigo Yamamoto, Hiromi Fujita, Fumio Terasoma, Kouji Kida, Masakatsu Taira, Fumiko Nakadouzono, Mutsuyo Gokuden, Manabu Hirano, Mamoru Miyashiro, Kouichi Inari, Yukie Shimazu, Kenji Tabara, Atsushi Toyoda, Dai Yoshimura, Takehiko Itoh, Tomokazu Kitano, Mitsuhiko P. Sato, Keisuke Katsura, Shakhinur Islam Mondal, Yoshitoshi Ogura, Shuji Ando, Tetsuya Hayashi. Extremely Low Genomic Diversity of Rickettsia japonica Distributed in Japan, Genome Biology and Evolution, Vol. 9, No. 1, pp. 124-133, Jan. 2017.  公式リンク  
  
• Vicky L Hunt, Isheng J Tsai, Avril Coghlan, Adam J Reid, Nancy Holroyd, Bernardo J Foth, Alan Tracey, James A Cotton, Eleanor J Stanley, Helen Beasley, Hayley M Bennett, Karen Brooks, Bhavana Harsha, Rei Kajitani, Arpita Kulkarni, Dorothee Harbecke, Eiji Nagayasu, Sarah Nichol, Yoshitoshi Ogura, Michael A Quail, Nadine Randle, Dong Xia, Norbert W Brattig, Hanns Soblik, Diogo M Ribeiro, Alejandro Sanchez-Flores, Tetsuya Hayashi, Takehiko Itoh, Dee R Denver, Warwick Grant, Jonathan D Stoltzfus, James B Lok, Haruhiko Murayama, Jonathan Wastling, Adrian Streit, Taisei Kikuchi, Mark Viney, Matthew Berriman. The genomic basis of parasitism in the Strongyloides Glade of nematodes, Nature Genetics, Vol. 48, No. 3, pp. 299-307, Mar. 2016.  公式リンク  
  
• Mariko Naito, Yoshitoshi Ogura, Takehiko Itoh, Mikio Shoji, Masaaki Okamoto, Tetsuya Hayashi, Koji Nakayama. The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat, DNA Research, Vol. 23, No. 1, pp. 11-19, Feb. 2016.  公式リンク  
  
• Rei Kajitani, Kouta Toshimoto, Hideki Noguchi, Atsushi Toyoda, Yoshitoshi Ogura, Miki Okuno, Mitsuru Yabana, Masayuki Harada, Eiji Nagayasu, Haruhiko Maruyama, Yuji Kohara, Asao Fujiyama, Tetsuya Hayashi, Takehiko Itoh. Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads, Genome Research, Vol. 24, No. 8, pp. 1384-1395, Aug. 2014.  公式リンク  
  
• Eiji Nagayasu, Yoshitoshi Ogura, Takehiko Itoh, Ayako Yoshida, Gunimala Chakraborty, Tetsuya Hayashi, Haruhiko Maruyama. Transcriptomic analysis of four developmental stages of Strongyloides venezuelensis, Parasitology International, Vol. 62, No. 1, pp. 57-65, 2013.  公式リンク  
  
• Mainil JG, Bardiau M, Ooka T, Ogura Y, Murase K, Etoh Y, Ichihara S, Horikawa K, Buvens G, Piérard D, Itoh T, Hayashi T.. Typing of O26 enterohaemorrhagic and enteropathogenic Escherichia coli isolated from humans and cattle with IS621 multiplex PCR-based fingerprinting, Journal of Applied Microbiology, Vol. 111, No. 3, pp. 773-786, Sept. 2011.  公式リンク  
  
• Tomomi Kuwahara, Yositoshi Ogura, Kenshiro Oshima, Ken Kurokawa, Tadasuke Ooka, Hideki Hirakawa, Takehiko Itoh, Haruyuki Nakayama-Imaohji, Minoru Ichimura, Kikuji Itoh, Chieko Ishifune, Yoichi Maekawa, Koji Yasutomo, Masahira Hattori, Tetsuya Hayashi. The Lifestyle of the Segmented Filamentous Bacterium: A Non-Culturable Gut-Associated Immunostimulating Microbe Inferred by Whole-Genome Sequencing, DNA Research, Vol. 18, No. 4, pp. 291-303, July 2011.  公式リンク  
  
• Md Asadulghani, Yoshitoshi Ogura, Tadasuke Ooka, Takehiko Itoh, Akira Sawaguchi, Atsushi Iguchi, Keisuke Nakayama, Tetsuya Hayashi. The Defective Prophage Pool of Escherichia coli O157: Prophage-Prophage Interactions Potentiate Horizontal Transfer of Virulence Determinants, Plos Pathogens, Vol. 5, No. 5, May 2009.  公式リンク  
  
• Ken Kurokawa, Tomomi Kuwahara, Kenshiro Oshima, Hidehiro Toh, Atsushi Toyoda, Hideto Takami, Hidetoshi Morita, Vineet K. Sharma, Tulika P. Srivastava, Todd D. Taylor, Hideki Noguchi, Hiroshi Mori, Yoshitoshi Ogura, Dusko S. Ehrlich, Kikuji Itoh, Toshihisa Takagi, yoshiyuki sakaki, Tetsuya Hayashi, Masahira Hattori. Comparative Metagenomics Revealed Commonly Enriched Gene Sets in Human Gut Microbiomes, DNA research, Oxford University Press, 14, 4, 169-181, Aug. 2007.

国内会議発表 (査読なし・不明)

• 梶谷嶺, 野口英樹, 桑原知己, 小椋義俊, 林哲也, 伊藤武彦. メタゲノム用de novoアセンブリ・クラスタリングツールMetaPlatanusの開発, 第9回日本ゲノム微生物学会年会, Mar. 2015.
• 吉村大, 後藤恭宏, 小椋義俊, 林哲也, 伊藤武彦. 全ゲノム配列情報を用いた近縁菌株の迅速高精度系統解析手法の開発：病原菌感染経路推測への応用, 第9回日本ゲノム微生物学会年会, Mar. 2015.
• 梶谷嶺, 小椋義俊, 桑原知己, 林哲也, 伊藤武彦. メタゲノム用de novoアセンブラの開発およびIlluminaデータを用いたベンチマーク, 第8回日本ゲノム微生物学会年会, Mar. 2014.
• 矢花充, 長安英治, 小椋義俊, 林哲也, 丸山治彦, 伊藤武彦. 高ヘテロ接合性をもつベネズエラ糞線虫のゲノム解析, 第35回日本分子生物学会年会, Dec. 2012.
• 原田真幸, 小椋義俊, 伊藤武彦, 桑原知巳, 林哲也. ヒト体内細菌叢における接合型トランスポゾンの解析, 第35回日本分子生物学会年会, Dec. 2012.

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