論文

• Naohisa Wada, Hideaki Yuasa, Rei Kajitani, Yasuhiro Gotoh, Yoshitoshi Ogura, Dai Yoshimura, Atsushi Toyoda, Sen-Lin Tang, Yukihiro Higashimura, Hugh Sweatman, Zac Forsman, Omri Bronstein, Gal Eyal, Nalinee Thongtham, Takehiko Itoh, Tetsuya Hayashi, Nina Yasuda. A ubiquitous subcuticular bacterial symbiont of a coral predator, the crown-of thorns starfish, in the Indo-Pacifc, Microbiome, Vol. 8, No. 1, 123, Aug. 2020.
• Rei Kajitani, Dai Yoshimura, Yoshitoshi Ogura, Yasuhiro Gotoh, Tetsuya Hayashi, Takehiko Itoh. Platanus_B: an accurate de novo assembler for bacterial genomes using an iterative error- removal process, DNA Research, 27, 3, June 2020.
• Keiji Nakamura, Kazunori Murase, Mitsuhiko P. Sato, Atsushi Toyoda, Takehiko Itoh, Jacques Georges Mainil, Denis Piérard, Shuji Yoshino, Keiko Kimata, Junko Isobe, Kazuko Seto, Yoshiki Etoh, Hiroshi Narimatsu, Shioko Saito, Jun Yatsuyanagi, Kenichi Lee, Sunao Iyoda, Makoto Ohnishi, Tadasuke Ooka, Yasuhiro Gotoh, Yoshitoshi Ogura, Tetsuya Hayashi. Differential dynamics and impacts of prophages and plasmids on the pangenome and virulence factor repertoires of Shiga toxin-producing Escherichia coli O145:H28, Microbial Genomics, Vol. 6, No. 1, e000323, Jan. 2020.
• Mitsuhiko P. Sato, Yoshitoshi Ogura, Keiji Nakamura, Ruriko Nishida, Yasuhiro Gotoh, Masahiro Hayashi, Junzo Hisatsune, Motoyuki Sugai, Itoh Takehiko, Tetsuya Hayashi. Comparison of the sequencing bias of currently available library preparation kits for Illumina sequencing of bacterial genomes and metagenomes, DNA Research, Vol. 26, No. 5, 391-398, Oct. 2019.
• Dai Yoshimura, Rei Kajitani, Yasuhiro Gotoh, Katsuyuki Katahira, Miki Okuno, Yoshitoshi Ogura, Tetsuya Hayashi, Takehiko Itoh. Evaluation of SNP calling methods for closely related bacterial isolates and a novel high-accuracy pipeline: BactSNP, Microbial Genomics, e000261, May 2019.
• Yoshitoshi Ogura, Kazuko Seto, Yo Morimoto, Keiji Nakamura, Mitsuhiko P. Sato, Yasuhiro Gotoh, Takehiko Itoh, Atsushi Toyoda, Makoto Ohnishi, Tetsuya Hayashi. Genomic Characterization of β-Glucuronidase-Positive Escherichia coli O157:H7 Producing Stx2a, Emerging infectious diseases, Centers for Disease Control and Prevention, Vol. 24, No. 12, 2219-2227, Dec. 2018.
• Yoshitoshi Ogura, Yasuhiro Gotoh, Takehiko Itoh, Mitsuhiko P. Sato, Kazuko Seto, Shyuji Yoshino, Junko Isobe, Yoshiki Etoh, Mariko Kurogi, Keiko Kimata, Eriko Maeda, Denis Pierard, Masahiro Kusumoto, Masato Akiba, Kiyoshi Tominaga, Yumi Kirino, Yuki Kato, Katsuhiko Shirahige, Tadasuke Ooka, Nozomi Ishijima, Ken-ichi Lee, Sunao Iyoda, Jacques Georges Mainil, Tetsuya Hayashi. Population structure of Escherichia coli O26 : H11 with recent and repeated stx2 acquisition in multiple lineages, Microbial genomics, Microbiology Society, Vol. 39, No. 11, Nov. 2017.

国内会議発表 (査読なし・不明)

• 吉村⼤, 後藤 恭宏, 小椋義俊, 林哲也, 伊藤武彦. 全ゲノム配列情報を⽤いた近縁菌株間⾼精度SNP検出パイプラインBactSNPの開発, 第12回日本ゲノム微生物学会年会, Mar. 2018.
• 梶⾕嶺, 小椋義俊, 後藤恭宏, 林哲也, 伊藤武彦. 10X-Linked-reads、Mate-pairを活⽤したメタゲノムアセンブリ⼿法の開発, 第12回日本ゲノム微生物学会年会, Mar. 2018.
• 湯淺英知, 梶谷嶺, 髙橋和希, 吉村大, 小椋義俊, Zac Forsman, Nalinee Thongtham, Niphon Phongsuwan, Coralie Taquet, Marc Taquet, 林哲也, 伊藤武彦, 安田仁奈. 異所的に種分化したオニヒトデ種間での受精遺伝子の進化, 日本サンゴ礁学会第20回大会, Nov. 2017.

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