論文

• Satoshi Yamashita, Misao Mizuno, Kazuhiro Takemura, Akio Kitao, Yasuhisa Mizutani. Dependence of Vibrational Energy Transfer on Distance in a Four-Helix Bundle Protein: Equidistant Increments with the Periodicity of α Helices, The Journal of Physical Chemistry B, May 2022.  公式リンク  
  
• Takeo Yamawaki, Misao Mizuno, Haruto Ishikawa, Kazuhiro Takemura, Akio Kitao, Yoshitsugu Shiro, Yasuhisa Mizutani. Regulatory Switching by Concerted Motions on the Microsecond Time Scale of the Oxygen Sensor Protein FixL, The Journal of Physical Chemistry B, Vol. 125, No. 25, pp. 6847-6856, June 2021.  公式リンク  
  
• Aini Gusmira, Kazuhiro Takemura, Shin Yong Lee, Takehiko Inaba, Kyoko Hanawa-Suetsugu, Kayoko Oono-Yakura, Kazuma Yasuhara, Akio Kitao, Shiro Suetsugu. Regulation of caveolae through cholesterol-depletion-dependent tubulation mediated by PACSIN2, Journal of Cell Science, Oct. 2020.  公式リンク  
  
• Kei Terayama, Ai Shinobu, Koji Tsuda, Kazuhiro Takemura, Akio Kitao. evERdock BAI: Machine-learning-guided selection of protein-protein complex structure, The Journal of Chemical Physics, 151, 215104, Dec. 2019.  公式リンク  
  
• Kyoko Hanawa-Suetsugu, Yuzuru Itoh, Maisarah Ab Fatah, Tamako Nishimura, Kazuhiro Takemura, Kohei Takeshita, Satoru Kubota, Naoyuki Miyazaki, Wan Nurul Izzati Wan Mohamad Noor, Takehiko Inaba, Nhung Thi Hong Nguyen, Sayaka Hamada-Nakahara, Kayoko Oono-Yakura, Masashi Tachikawa, Kenji Iwasaki, Daisuke Kohda, Masaki Yamamoto, Akio Kitao, Atsushi Shimada, Shiro Suetsugu. Phagocytosis is mediated by two-dimensional assemblies of the F-BAR protein GAS7, Nature Communications, 10, 1, 1-13, Nov. 2019.  公式リンク  
  
• Justin Chan, Hong-Rui Lin, Kazuhiro Takemura, Kai-Chun Chang, Yuan-Yu Chang, Yasumasa Joti, Akio Kitao, Lee-Wei Yang. An Efficient Timer and Sizer of Biomacromolecular Motions, Structure, Nov. 2019.  公式リンク  
  
• Yuichi Yokochi, Kazunori Sugiura, Kazuhiro Takemura, Keisuke Yoshida, Satoshi Hara, Ken-ichi Wakabayashi, Akio Kitao, Toru Hisabori. Impact of key residues within chloroplast thioredoxin-f on recognition for reduction and oxidation of target proteins, Journal of Biological Chemistry, 294, 46, 17437-17450, Nov. 2019.  公式リンク  
  
• Kazuhiro Takemura, Akio Kitao. More efficient screening of protein-protein complex model structures for reducing the number of candidates, Biophysics and Physicobiology, 16, 295-303, Nov. 2019.  公式リンク  
  
• Ai Shinobu, Kazuhiro Takemura, Nobuyuki Matubayasi, Akio Kitao. Refining evERdock: Improved selection of good protein-protein complex models achieved by MD optimization and use of multiple conformations, The Journal of Chemical Physics, 149, 19, 195101, Nov. 2018.  公式リンク  
  
• Kazuhiro Takemura, Chika Sato, Akio Kitao. ColDock: Concentrated Ligand Docking with All-Atom Molecular Dynamics Simulation, The Journal of Physical Chemistry B, 122, 29, 7191-7200, July 2018.  公式リンク  
  
• Kazuhiro Takemura, Nobuyuki Matubayasi, Akio Kitao. Binding free energy analysis of protein-protein docking model structures by evERdock, The Journal of Chemical Physics, 148, 10, 105101, Mar. 2018.  公式リンク  
  
• Kazuhiro Takemura, Kyoko Hanawa-Suetsugu, Shiro Suetsugu, Akio Kitao. Salt Bridge Formation between the I-BAR Domain and Lipids Increases Lipid Density and Membrane Curvature, Scientific Reports, Dec. 2017.
• Akio Kitao, Kazuhiro Takemura. High anisotropy and frustration: the keys to regulating protein function efficiently in crowded environments., Current opinion in structural biology, Vol. 42, pp. 50-58, Feb. 2017.  公式リンク  
  
• Deguchi, A., Tomita, T., Ohto, U., Kazuhiro Takemura, Akio Kitao, Miyake, K., Akashi-Takamura, S., Maru, Y.. Eritoran inhibits S100A8-mediated TLR4/MD-2 activation and tumor growth by changing the immune microenvironment, Oncogene, Vol. 35, No. 11, pp. 1445-1456, 2016.  公式リンク  
  

著書

• Kazuhiro Takemura, Akio Kitao. Molecular dynamics, Plasma Membrane Shaping, pp. 431-443, Sept. 2022.  公式リンク  

国際会議発表 (査読なし・不明)

• Kazuhiro Takemura, Akio Kitao. An efficient screening, an accurate evaluation, and a simple prediction of protein complex structures, Oct. 2024.

国内会議発表 (査読なし・不明)

• Kazuhiro Takemura, Akio Kitao. Unguided Binding MD of Protein-Protein Complexes by PPI-ColDock, 59th Annual Meeting of Biophysical Society of Japan, Nov. 2021.
• Ryunosuke Kiuchi, Kazuhiro Takemura, Akio Kitao. Application of ColDock to docking of cryptic pockets, 59th Annual Meeting of Biophysical Society of Japan, Nov. 2021.
• 竹村 和浩, 北尾 彰朗. PPI-ColDock 法を用いた蛋白質‐ 蛋白質複合体形成, 第21回日本蛋白質科学会年会, June 2021.
• 宮澤佳希, TranPhuoc Duy, 竹村和浩, 北尾彰朗. PaCS-MD/MSM を用いたタンパク質-タンパク質複合体の結合親和性評価, 第34回分子シミュレーション討論会, Dec. 2020.
• 宮澤佳希, TranPhuoc Duy, 竹村和浩, 北尾彰朗. PaCS-MD/MSM を用いたタンパク質複合体の速度定数評価, Sept. 2020.
• Kazuhiro Takemura, Akio Kitao. Unguided Binding MD of Protein-Protein Complexes by PPI-ColDock, Sept. 2020.
• Kazuhiro Takemura, Akio Kitao. Unguided Binding MD of Protein-Protein Complexes by PPI-ColDock, 第20回日本蛋白質科学会年会, July 2020.
• Yoshiki Miyazawa, Duy Phuoc Tran, Kazuhiro Takemura, Akio Kitao. Protein-protein complex dissociation simulated by Parallel Cascade Selection Molecular Dynamics, 第20回日本蛋白質科学会年会, July 2020.

その他の論文・著書など

• 竹村 和浩, 畑 宏明, 北尾 彰朗. タンパク質複合体構造の形成・解離メカニズムと予測, 日本物理学会誌, 一般社団法人 日本物理学会, Vol. 74, No. 8, pp. 533-541, July 2019.

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