|
松崎由理 2013年 研究業績一覧 (19件 / 132件)
論文
-
Masahito Ohue,
Yuri Matsuzaki,
Takehiro Shimoda,
Takashi Ishida,
Yutaka Akiyama.
Highly Precise Protein-Protein Interaction Prediction Based on Consensus Between Template-Based and de Novo Docking Methods,
BMC Proceedings,
BioMed Central,
Volume 7,
Supplement 7,
S6,
Dec. 2013.
公式リンク
-
Yuri Matsuzaki,
Nobuyuki Uchikoga,
Masahito Ohue,
Takehiro Shimoda,
Toshiyuki Sato,
Takashi Ishida,
Yutaka Akiyama.
MEGADOCK 3.0: A high-performance protein-protein interaction prediction software using hybrid parallel computing for petascale supercomputing environments,
Source Code for Biology and Medicine,
BioMed Central,
Vol. 8,
No. 1,
Sept. 2013.
公式リンク
-
Nobuyuki Uchikoga,
Yuri Matsuzaki,
Masahito Ohue,
Takatsugu Hirokawa,
Yutaka Akiyama.
Re-docking scheme for generating near-native protein complexes by assembling residue interaction fingerprints,
PLOS ONE,
Vol. 8,
No. 7,
e69365,
July 2013.
公式リンク
-
Yuri Matsuzaki,
Masahito Ohue,
Nobuyuki Uchikoga,
Yutaka Akiyama.
Protein-protein interaction network prediction by using rigid-body docking tools: application to bacterial chemotaxis,
Protein and Peptide Letters,
Bentham Science,
Volume 21,
Issue 8,
pp. 790-798,
July 2013.
公式リンク
国際会議発表 (査読有り)
国際会議発表 (査読なし・不明)
-
Masahito Ohue,
Yuri Matsuzaki,
Takehiro Shimoda,
Takashi Ishida,
Yutaka Akiyama.
Highly precise protein-protein interaction prediction by integrating template-based and template-free protein docking,
2nd IIT Madras – Tokyo Tech Joint Symposium on Techniques and Applications of Bioinformatics,
P08,
Sept. 2013.
-
Masahito Ohue,
Yuri Matsuzaki,
Takehiro Shimoda,
Takashi Ishida,
Yutaka Akiyama.
Improvement of protein-protein interaction prediction by integrating template-based and template-free protein docking,
ACM Conference on Bioinformatics, Computatioal Biology and Biomedical Informatics (ACM-BCB2013),
p. 667,
Sept. 2013.
-
Nobuyuki Uchikoga,
Yuri Matsuzaki,
Masahito Ohue,
Takatsugu Hirokawa,
Yutaka Akiyama.
Re-docking scheme of protein-protein interactions for generating near-native interaction patterns in difficult docking cases,
2nd IIT Madras – Tokyo Tech Joint Symposium on Techniques and Applications of Bioinformatics,
Sept. 2013.
-
Takehiro Shimoda,
Masahito Ohue,
Yuri Matsuzaki,
Takayuki Fujiwara,
Nobuyuki Uchikoga,
Takashi Ishida,
Yutaka Akiyama.
The MEGADOCK project: Ultra-high-performance protein-protein interaction prediction tools on supercomputing environments,
ACM Conference on Bioinformatics, Computatioal Biology and Biomedical Informatics (ACM-BCB2013),
p. 668,
Sept. 2013.
-
Yuri Matsuzaki,
Masahito Ohue,
Nobuyuki Uchikoga,
Takashi Ishida,
Yutaka Akiyama.
Structure based protein-protein interaction network prediction of EGFR signaling related proteins using MEGADOCK,
2nd IIT Madras – Tokyo Tech Joint Symposium on Techniques and Applications of Bioinformatics,
Sept. 2013.
-
Masahito Ohue,
Yuri Matsuzaki,
Nobuyuki Uchikoga,
Kohei Yamamoto,
Takayuki Fujiwara,
Takehiro Shimoda,
Toshiyuki Sato,
Takashi Ishida,
Yutaka Akiyama.
Protein-protein interaction prediction based on rigid-body docking with ultra-high-performance computing technique: applications to affinity prediction on CAPRI round 21 and interactome analyses,
CAPRI 2013 5th Evaluation Meeting,
Apr. 2013.
-
Yuri Matsuzaki,
Nobuyuki Uchikoga,
Masahito Ohue,
Takashi Ishida,
Yutaka Akiyama.
Protein-protein interaction network prediction by using rigid-body docking tool MEGADOCK,
Biophysical Society 57th Annual Meeting,
Feb. 2013.
国内会議発表 (査読なし・不明)
-
Masahito Ohue,
Yuri Matsuzaki,
Takehiro Shimoda,
Takashi Ishida,
Yutaka Akiyama.
Highly precise protein-protein interaction prediction by integrating template-based and template-free protein docking,
The 2013 Annual Conference of the Japanese Society for Bioinformatics (JSBi2013),
P077,
Nov. 2013.
-
大上雅史,
松崎由理,
内古閑伸之,
石田貴士,
秋山泰.
MEGADOCK:構造ドッキング計算を用いたタンパク質間相互作用の大規模予測,
第13回日本蛋白質科学会年会,
1P-059,
June 2013.
-
大上雅史,
松崎由理,
内古閑伸之,
山本航平,
下田雄大,
藤原隆之,
石田貴士,
秋山泰.
MEGADOCK 3.0:超並列タンパク質間相互作用予測システム,
生命情報科学若手の会 第4回研究会,
Mar. 2013.
-
松崎由理,
大上雅史,
石田貴士,
内古閑伸之,
秋山泰.
大規模タンパク質間ネットワーク推定に関する研究,
平成24年度「京」を中核とするHPCIシステム利用研究課題中間報告会,
Mar. 2013.
-
秋山泰,
松崎由理,
石田貴士,
大上雅史,
内古閑 伸之.
網羅的タンパク質ドッキング予測プログラムMEGADOCKの開発と応用,
文部科学省「革新的ハイパフォーマンス・コンピューティング・インフラ (HPCI) の構築」HPCI戦略プログラム「グランドチャレンジ・アプリケーションの研究開発」公開シンポジウム,
Mar. 2013.
-
秋山泰,
松崎由理,
大上雅史,
石田貴士,
内古閑伸之.
網羅的タンパク質ドッキング解析プログラムMEGADOCKの開発と応用,
ISLiMソフトウェア研究開発報告会,
Jan. 2013.
-
大上雅史,
松崎由理,
石田貴士,
秋山泰.
MEGADOCK: 大規模タンパク質間相互作用予測システムとその応用,
HPCS2013 ハイパフォーマンスコンピューティングと計算科学シンポジウム,
Jan. 2013.
[ BibTeX 形式で保存 ]
[ 論文・著書をCSV形式で保存
]
[ 特許をCSV形式で保存
]
|