論文

• Tingyu Wang, Rio Yokota, Lorena A. Barba. ExaFMM: a high-performance fast multipole method library with C++ and Python interfaces, The Journal of Open Source Software, Vol. 6, No. 61, pp. 3145, May 2021.
• Rio Yokota, Lorena Barba, Tetsu Narumi, Kenji Yasuoka. Petascale turbulence simulation using a highly parallel fast multipole method, Computer Physics Communications, Vol. 184, No. 3, pp. 445–455, Sept. 2012.
• Rio Yokota, Lorena Barba. FMM-based vortex method for simulation of isotropic turbulence on GPUs, compared with a spectral method, Computers and Fluids, Vol. 80, pp. 17–27, Aug. 2012.
• Rio Yokota, Lorena Barba. A Tuned and scalable fast multipole method as a preeminent algorithm for exascale systems, International Journal of High Performance Computing Applications, Vol. 26, No. 4, pp. 337-346, Jan. 2012.
• Rio Yokota, Lorena Barba. Hierarchical N-body simulations with auto-tuning for heterogeneous systems, Computing in Science and Engineering, Vol. 14, No. 3, pp. 30–39, Jan. 2012.
• Jaydeep Bardhan, R. Yokota, Matthew Knepley, Lorena Barba, Tsuyoshi Hamada. Biomolecular electrostatics using a fast multipole BEM on up to 512 GPUs and a billion unknowns, Computer Physics Communications, Vol. 182, No. 6, pp. 1272–1283, Mar. 2011.
• Rio Yokota, Lorena Barba. Comparing the treecode with FMM on GPUs for vortex particle simulations of a leapfrogging vortex ring, Computers and Fluids, Vol. 45, No. 1, pp. 155–161, Dec. 2010.
• Rio Yokota, Lorena Barba, Matthew Knepley. PetRBF–A parallel O(N) algorithm for radial basis function interpolation with Gaussians, Computer Methods in Applied Mechanics and Engineering, Vol. 199, No. 25-28, pp. 1793–1804, Mar. 2010.

著書

• Rio Yokota, Lorena Barba. Treecode and fast multipole method for N-body simulation with CUDA, GPU Computing Gems Emerald Edition, Morgan Kaufmann, Feb. 2011.

国際会議発表 (査読有り)

• Rio Yokota, Lorena Barba. Recent Trends in Hierarchical N-body Methods on GPUs, GPU Technology Conference, May 2012.
• Tetsu Narumi, Rio Yokota, Lorena Barba, Kenji Yasuoka. Petascale Turbulence Simulation Using FMM, HOKKE-19, Nov. 2011.
• Rio Yokota, Lorena Barba. Parameter Tuning of a Hybrid Treecode-FMM on GPUs, The First International Workshop on Characterizing Applications for Heterogeneous Exascale Systems, June 2011.
• Rio Yokota, Lorena Barba. Fast Multipole Method vs. Spectral Methods for the Simulation of Isotropic Turbulence on GPUs, 23rd International Conference on Parallel Computational Fluid Dynamics, May 2011.
• Rio Yokota, Jaydeep Bardhan, Matthew Knepley, Lorena Barba. (Really) Fast Macromolecular Electrostatics -- Fast Algorithms, Open Software and Accelerated Computing, ACS Division of Physical Chemistry 240th National Meeting, Aug. 2010.
• Rio Yokota, Lorena Barba. Performance of the Fast Multipole Method on GPUs Using Various Kernels, 9th World Congress on Computational Mechanics, July 2010.
• Rio Yokota, Lorena Barba. Comparing the Treecode with FMM on GPUs for Vortex Particle Simulations of a Leapfrogging Vortex Ring, 22nd International Conference on Parallel Computational Fluid Dynamics, May 2010.

国際会議発表 (査読なし・不明)

• Rio Yokota, Tetsu Narumi, Lorena Barba, Kenji Yasuoka. Scaling Fast Multipole Methods up to 4000 GPUs, ATIP/A*CRC Workshop on Accelerator Technologies for High Performance Computing, May 2012.
• Rio Yokota, Lorena Barba. Large Scale Multi-GPU FMM for Bioelectrostatics, SIAM Conference on Computational Science and Engineering, Feb. 2011.
• Rio Yokota, Lorena Barba. RBF Interpolation using Gaussians with Domain Decomposition on GPUs, SIAM Annual Meeting, July 2010.

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