Journal Paper

• Hamid Ghomi, Mohammad S. Rahman, Priya R. Chalise, Yasushi Hayashi, Masato Watanabe, Akitoshi Okino, Takashi Ano, Makoto Shoda, Eiki Hotta. Experimental Investigation of Effect of Low-Energy Pulsed Atmospheric Electron Beam on Bacterial Cells, Japanese J. Applied Phys., Vol. 44, No. 12, pp. 8698-8701, 2005.
• Hung-Soo Joo, Mitsuyo Hirai, Makoto Shoda. Nitrification and Denitrification in High-Strength Ammonium by Alcaligenes faecalis, Biotechnol. Letts., Vol. 27, pp. 773-778, 2005.
• Makoto Shoda, Yasushi Sugano. Recent Advances in Bacterial Cellulose Production, Biotechnol. Bioprocess Eng., Vol. 10, pp. 1-8, 2005.
• Magdalena Maria Szczech, Makoto Shoda. The Influence of Bacillus subtilis RB14-C on the Development of Rhizoctonia solani and Indigenous Microorganisms in the Soil, Can. J. Microbiol., Vol. 51, No. 5, pp. 405-411, 2005.
• Kenji Tsuge, Satoka Inoue, Takashi Ano, Mitsuhiro Itaya, Makoto Shoda. Horizontal Transfer of Iturin A Operon, itu, to Bacillus subtilis 168 and Conversion into an Iturin A Producer, Antimicro. Agents Chemother., Vol. 49, No. 11, pp. 4641-4648, 2005.
• Nobuhiro Kita, Takeshi Ohya, Hidetoshi Uemura, Ken Nomura, Masahumi Manago, Makoto Shoda. Biological Control of Damping-Off of Tomato Seedlings and Cucumber Phomopsis Root Rot by Bacillus subtilis RB14-C, JARQ, Vol. 39, No. 2, pp. 109-114, 2005.
• Shinya Saijo, Takao Sato, Nobuo Tanaka, Atsushi Ichiyanagi, Yasushi Sugano, Makoto Shoda. Precipitation Diagram and Optimization of Crystallization Conditions at Low Ionic Strength for Deglycosylated Dye-decolorizing Peroxidase from a Basidiomycete, Acta Cryst. F61, 729-732 (2005)., Vol. F61, pp. 729-732, 2005.
• Akio Iwanade, Jong Hee Jang, Mitsuyo Hirai, Makoto Shoda. Enhancement of Styrene Removals by Pseudomonas sp. SR-5 in Mixed Culture with Benzoic Acid-Degrading Bacterium in Biofilter, Environment. Technol., Vol. 26, pp. 941-949, 2005.
• Yasushi Sugano, Yosuke Ishii, Makoto Shoda. Role of H164 in a Unique Dye-Decolorizing Heme Peroxidase DyP, Biochem. Biophys. Res. Commu., Vol. 322, pp. 126-132, 2004.
• Takao Sato, Shusaku Hara, Takuro Matsui, Gen Sazaki, Shinya Saijo, Tadashi Ganbe, Nobuo Tanaka, Yasushi Sugano, Makoto Shoda. A Unique Dye-Decolorizing Peroxidase, DyP, from Thanatephorus cucumeris Dec 1: Heterologous Expression, Crystallization and Preliminary X-ray Analysis, Acta Crystallographica, Vol. D60, pp. 149-152, 2004.
• Priya R. Chalise, Mohammad S. Rahman, Hamid Ghomi, Yasushi Hayashi, Masato Watanabe, Akitoshi Okino, Takashi Ano, Makoto Shoda, Eiki Hotta. Bacterial Inactivation Using Low-Energy Pulsed-Electron Beam, , IEEE Transactions on Plasma Science, Vol. 32, pp. 1532-1539, 2004.
• Sangok Bae, Makoto Shoda. Bacterial Cellulose Production by Fed-Batch Fermentation in Molasses Medium , Biotechnol.Prog., Vol. 20, pp. 1366-1371, 2004.
• Sangok Bae, Yasushi Sugano, Kei Ohi, Makoto Shoda. Feature of Bacterial Cellulose Synthesis in a Mutant Generated by Disruption of the Diguanylate Cyclase 1 Gene of Acetobacter xylinum BPR 2001, Appl. Microbiol. Biotechnol., Vol. 65, pp. 315-322, 2004.
• Sangok Bae, Yasushi Sugano, Makoto Shoda. Improvement of Bacterial Cellulose Production by Addition of Agar in a Jar Fermentor , J. Biosci.Bioeng., Vol. 97, pp. 33-38, 2004.
• Maria Szczech, Makoto Shoda. Biocontrol of Rhizoctonia Damping-off of Tomato by Bacillus subtilis Combined with Burkholderia cepacia, J. Phytopathology, Vol. 152, pp. 549-556, 2004.
• Jong Hee Jang, Mitsuyo Hirai, Makoto Shoda. Styrene Degradation by Pseudomonas sp. SR-5 in Biofilters with Organic and Inorganic Packing Materials , Appl. Microbiol.Biotechol., Vol. 65, pp. 349-355, 2004.
• Masato Noro, Yasushi Sugano, Makoto Shoda. Utilization of Buffering Capacity of Corn Steep Liquor in Bacterial Cellulose with Production by Acetobacter xylinum, Appl. Microbiol. Biotechnol. , Vol. 64, pp. 199-205, 2004.
• Takehiko Ishida, Makoto Mitarai, Yasushi Sugano, Makoto Shoda. Role of Water-Soluble Polysaccharides in Bacterial Cellulose Production, Biotechnol. Bioeng, Vol. 83, pp. 474-478, 2003.
• Makoto Shoda. Characteristics of a newly isolated fungus Geotrichum candidum Dec 1 with broad degradation spectrum of xenobiotic compounds, Proceedings of 17th Forum for Applied Biotechnology, pp. 269-274, 2003.
• Noboru Shintani, Yasushi Sugano, Makoto Shoda. Decolorization of Kraft Pulp Bleaching Effluent by a Newly Isolated Fungus, Geotrichum candidum Dec 1, J. Wood Science, Vol. 48, No. 5, pp. 402-408, 2002.
• Takehiko Ishida, Yasushi Sugano, Makoto Shoda. Novel Glycosyltransferase Genes Involved in the Acetan Biosynthesis of Acetobacter xylinum, Biochem. Biophys. Res. Commu., Vol. 295, No. 2, pp. 230-235, 2002.
• Tomonori Nakai, Yoshiharu Nishiyama, Shigenori Kuga, Yasushi Sugano, Makoto Shoda. ORF2 Gene Involved in the Construction of High-Order Structure of Bacterial Cellulose, Biochem. Biophys. Res. Commu., Vol. 295, No. 2, pp. 458-462, 2002.
• Takehiko Ishida, Yasushi Sugano, Tomonori Nakai, Makoto Shoda. Effects of Acetan on Production of Bacterial Cellulose by Acetobacter xylinum, Biosci.Biotechnol.Biochem., Vol. 66, No. 8, pp. 1677-1681, 2002.
• Shin-ichiro Horiuchi, Yoshimasa Ishizaki, Kazumasa Okuno, Takashi Ano, Makoto Shoda. Change in Broth Culture is Associated with Significant Suppression of Escherichia coli Death under High Magnetic Field, Bioelectrochemistry, Vol. 57, pp. 139-144, 2002.
• Nam Jin Kim, Makoto Shoda. Removal of a High Load of Ammonia by a Marine Bacterium, Vibrio alginolyticus in Biofilter, Biotechnol.Bioprocess Eng., Vol. 7, pp. 1-6, 2002.
• YASUSHI SUGANO, Yuko Matsushima, Katsunori Tsuchiya, Hirokazu Aoki, mitsuyo hirai, MAKOTO SHODA. Degradation pathway of an anthraquinone dye catalyzed by a unique peroxidase DyP from Thanatephorus cucumeris Dec 1, Biodegradation, 15 November, 2008, on line published, Nov. 2008.
• Takuya Shimokawa, Mitsuyo Hirai, Makoto Shoda, Yasushi Sugano. Efficient dye decolorization and production of dye decolorizing enzymes by the basidiomycete Thanatephorus cucumeris Dec 1 in a liquid and solid hybrid culture, Journal of Bioscience and Bioengineering, Vol. 106, No. 5, p. 481-487, Nov. 2008.
• Takuya Shimokawa, MAKOTO SHODA, YASUSHI SUGANO. Purification and characterization of two DyP isozymes from Thanatephorus cucumeris Dec 1 specifically expressed in an air-membrane surface bioreactor, Journal of Bioscience and Bioengineering, in press, Nov. 2008.
• Mozafer Shakeri, YASUSHI SUGANO, MAKOTO SHODA. Stable repeated-batch production of recombinant dye-decolorizing peroxidase (rDyP) from Aspergillus oryzae, Journal of Bioscience and Bioengineering, 105, 6, 683-686, June 2008.
• YASUSHI SUGANO, Riichi Muramatsu, Atsushi Ichiyanagi, MAKOTO SHODA. DyP, a unique dye-decolorizing peroxidase, represents a novel heme peroxidase family: Asp171 replaces the distal histidine of classical peroxidases, Journal of Biological Chemistry, Vol. 282, No. 50, pp. 36652-36658, Dec. 2007.
• Mohammad Shahedur Rahman, Takashi Ano, Makoto Shoda. Biofilm Fermentation of IturinA by a Recombinant Strain of Bacillus subtilis 168, J. Biotechnol., Vol. 127, pp. 503-507, 2006.
• Mohammad Shahedur Rahman, Takashi Ano, Makoto Shoda. Second Stage Production of Iturin A by Induced Germination of Bacillus subtilis RB14, J. Biotechnol., Vol. 125, pp. 513-515, 2006.
• Yasushi Sugano, Yuko Matsushima, Makoto Shoda. .Complete Decolorization of the Anthraquinone Dye Reactive blue 5 by the Concerted Action of Two Peroxidases from Thanatephorus cucumeris Dec 1, Appl. Microbiol. Biotechnol., Vol. 73, No. 4, pp. 862-871, 2006.
• Jong Hee Jang, Mitsuyo Hirai, Makoto Shoda. Effect of Shutdown on Styrene Removal in Biofilter Inoculated with Pseudomonas sp. SR-5,, J. Hazard. Materials., Vol. B129, pp. 223-227, 2006.
• Shinzi Mizumoto, Mitsuyo Hirai, Makoto Shoda. Production of Lipopeptide Antibiotic Iturin A Using Soybean Curd Residue Cultivated with Bacillus subtilis in Solid-state Fermentation, Appl.Microbiol.Biotechnol., Vol. 72, pp. 869-875, 2006.
• Euisoon Jeong, Mitsuyo Hirai, Makoto Shoda. Removal of p-Xylene with Pseudomonas sp. NBM21 in Biofilter, J. Biosci., Bioeng., Vol. 102, pp. 281-287, 2006.
• Jong Hee Jang, Mitsuyo Hirai, Makoto Shoda. Enhancement of Styrene Removal Efficiency in Biofilter by Mixed Cultures of Pseudomonas sp. SR-5, J. Biosci., Bioeng., Vol. 102, pp. 53-59, 2006.
• Jong Hee Jang, Mitsuyo Hirai, Makoto Shoda. Effect of Shutdown on Styrene Removal in Biofilter Inoculated with Pseudomonas sp. SR-5, J. Hazard. Materials., Vol. B129, pp. 223-227, 2006.
• Hung-Soo Joo, Mitsuyo Hirai, Makoto Shoda. Piggery wastewater treatment using Alcaligenes faecalis strain No. 4 with heterotrophic nitrification and aerobic denitrification, Water Research, Vol. 40, pp. 3029-3036, 2006.
• Hamid Ghomi, Mohammad Shahedur Rahman, Priya Raj Chalise, Yasushi Hayashi, MASATO WATANABE, AKITOSHI OKINO, TAKASHI ANO, MAKOTO SHODA, EIKI HOTTA. Experimental Investigation of Effect of Low-Energy Pulsed Atmospheric Electron Beam on Bacterial Cells, Jpn. J. Appl. Phys., Vol. 44, No. 12, pp. 8698-8701, Dec. 2005.
• MAKOTO SHODA, YASUSHI SUGANO. Recent advances in bacterial cellulose production, Biotechnology and Bioprocess Engineering, Vol. 10, pp. 1-8, 2005.
• YASUSHI SUGANO, MAKOTO SHODA. Precipitation diagram and optimizing crystallization condition at low ionic strength for deglycosylated dye-decolorizing peroxidase from a basidiomycete, Acta Crystallogr. F, Vol. 61, pp. 729-732, 2005.
• Sang Ok Bae, YASUSHI SUGANO, MAKOTO SHODA. Comparison of bacterialcellulose production in a jar fermentor between Acetobacter xylinum BPR2001 and its mutant, acetan-nonproducing strain EP1, J. Microbiol. Biotechnol., Vol. 15, No. 2, pp. 247-253, 2005.
• Priya Raj Chalise, Mohammad S.Rahman, Hamid Ghomi, Yasushi Hayashi, MASATO WATANABE, AKITOSHI OKINO, TAKASHI ANO, MAKOTO SHODA, Eiki Hotta. Bacterial Inactivation Using Low-Energy Pulsed-Electron Beam, IEEE Trans. on Plasma Science, Vol. 32, No. 4, pp. 1532-1539, Aug. 2004.
• YASUSHI SUGANO, Yosuke Ishii, MAKOTO SHODA. Role of H164 in a unique dye-decolorizing heme peroxidase DyP, Biochem. Biophys. Res. Comm., Vol. 322, No. 1, pp. 126-132, 2004.
• Sang Ok Bae, YASUSHI SUGANO, MAKOTO SHODA. Features of bacterial cellulose synthesis in a mutant generated by disruption of the diguanylate cyclase 1gene of Acetobacter xylinum BPR2001, Appl. Microbiol. Biotechnol., Vol. 65, pp. 315-322, 2004.
• Naoto Noro, YASUSHI SUGANO, MAKOTO SHODA. Utilization of the buffering capacity of corn steep liquor in bacterial cellulose production by Acetobacter xylinum, Appl. Microbiol. Biotechnol., Vol. 64, No. 2, pp. 199-205, 2004.
• YASUSHI SUGANO, MAKOTO SHODA. A unique dye-decolorizing peroxidase, DyP, from Thanatephorus cucumeris Dec 1: heterologous expression, crystallization and prelimimary X-ray analysis, Acta Crystallogr D, Vol. 60, No. 1, pp. 149-152, 2004.
• YASUSHI SUGANO, Sang Ok Bae, MAKOTO SHODA. Improvement of bacterial cellulose production by addition of agar in a jar frementor, J. Biosci. Bioeng., Vol. 97, No. 1, pp. 33-38, 2004.
• Takehiko Ishida, Makoto Mitarai, YASUSHI SUGANO, MAKOTO SHODA. Role of water-soluble polysaccharide in bacterial cellulose production, Biotechnology and Bioengineering, Vol. 83, No. 4, pp. 474-478, 2003.
• Noboru Shintani, YASUSHI SUGANO, MAKOTO SHODA. Decoloization of kraft pulp bleaching effluent by a newly isolated fungus, Geotrichum candidum Dec 1, J. Wood Sci., Vol. 48, pp. 402-408, 2002.
• Kazumasa OKUNO, TAKASHI ANO, MAKOTO SHODA, Shin-ichiro Horiuchi, Yoshimasa Ishizaki. Change in broth culture is associated with significant suppression of Escherichia coli death under high magnetic field., Bioelectrochemistry, Vol. 57, No. 2, pp. 139-144, 2002.
• Maki Kondoh, Mitsuyo Hirai, Makoto Shoda. Integrated Biological and Chemical Control of Damping-off Caused by Rizoctonia solani with Bacillus subtilis RB14-C and Flutolanil, J. Biosci. Bioeng., Vol. 91, No. 2, pp. 173-177, 2001.
• Ya-ping Chao, Yasushi Sugano, Makoto Shoda. Bacterial Cellulose Production under Oxygen-Enriched Air at Different Fructose Concentrations in a 50-L Internal Loop Airlift Reactor, Appl. Microbiol. Biotechnol., Vol. 55, pp. 673-679, 2001.
• Shin-ichiro Horiuchi, Yoshimasa Ishizaki, Kazumasa Okuno, Takashi Ano, Makoto Shoda. Drastic High Magnetic Field Effect on Suppression of Escherichia coli Death, Bioelectrochemistry, Vol. 53, pp. 149-153, 2001.
• Kazumasa Okuno, Ryo Fujinami, Takashi Ano, Makoto Shoda. Disappearance of Growth Advantage in Stationary Phase (GASP) Phenomenon under a High Magnetic Field, Bioelectrochemistry, Vol. 53, pp. 165-169, 2001.
• Yoshimasa Ishizaki, Shin-ichiro Horiuchi, Kazumasa Okuno, Takashi Ano, Makoto Shoda. Twelve Hours Exposure to Inhomogeneous High Magnetic Field after Logarithmic Growth Phase Is Sufficient for Drastic Suppression of Escherichia coli Death, Bioelectrochemistry, Vol. 54, pp. 101-105, 2001.
• Mitsuyo Hirai, Manabu Kamamoto, Mohamad Yani, Makoto Shoda. Comparison of the Biological H₂S Removal Characteristics among Four Inorganic Packing Materials, J. Biosci. Bioeng., Vol. 91, pp. 396-402, 2001.
• Mitsuyo Hirai, Manabu Kamamoto, Mohamad Yani, Makoto Shoda. Comparison of the Biological NH₃ Removal Characteristics among Four Inorganic Packing Materials, J. Biosci. Bioeng., Vol. 91, pp. 428-430, 2001.
• Kenji Tsuge, Yuichiro Ohata, Makoto Shoda. Gene yerP, Involved in Surfactin Self-Resistance in Bacillus subtilis, Antimicro.Agents Chemother., Vol. 42, No. 12, pp. 3566-3573, 2001.
• Seong Jun Kim, Norikuni Suzuki, Yoshiko Unematsu, Makoto Shoda. Characterization of Aryl Alcohol Oxidase Produced by Decolorizing Fungus, Geotrichum candidum Dec 1, J. Biosci.Bioeng., Vol. 91, No. 2, pp. 166-172, 2001.
• Yaping Chao, Makoto Mitarai, Yasushi Sugano, Makoto Shoda. Effect of Addition of Water Soluble Polysaccharides on Bacterial Cellulose Production in a 50-L Airlift Reactor, Biotechnol. Prog., Vol. 17, No. 4, pp. 781-785, 2001.
• Kenji Tsuge, Takuya Akiyama, Makoto Shoda. Cloning,Sequencing and Characterization of Iturin A Operon, J. Bacterial., Vol. 183, No. 21, pp. 6265-6273, 2001.
• Kazumasa Okuno, Mitsuyo Hirai, Masaki Sugiyama, Keikiti Haruta, Makoto Shoda. Microbial Removal of Nitrogen Monoxide (NO) under Aerobic Conditions, Biotechnol. Letts., Vol. 22, pp. 77-79, 2000.
• Nam-Jin Kim, Mitsuyo Hirai, Makoto Shoda. Comparison of Organic and Inorganic Packing Materials in the Removal of Ammonia Gas in Biofilters, J. Hazard. Mater., Vol. B72, pp. B72, 2000.
• Andrew Benedict Tengkiat, Marylou M.Uy, Makoto Shoda. Comparative Study of Various Models of a Fixed bed Hydrogen Sulfide Biofilter , Inhenyeriya, Vol. 1, pp. 54-67, 2000.
• Nam-Jin KIM, Yasushi Sugano, Mitsuyo Hirai, Makoto Shoda. Removal of a High Load of Ammonia Gas by a Marine Bacterium, Vibrio alginolyticus, J. Biosci. Bioeng., Vol. 90, No. 4, pp. 410-415, 2000.
• Mohamad Yani, Mitsuyo Hirai, Makoto Shoda. Enhancement of Ammonia Removal in Peat Biofilter Seeded with Enriched Nitrifying Bacteria, Environment. Technol., Vol. 21, pp. 1199-1204, 2000.
• MAKOTO SHODA. Evaluation of Packing Materials and Introduction of Seeing Microorganisms in Biofilter for Waste Gas Treatment, Proceedings of　International Symposium of Institute of Environmental Studies and Institute for Environmental Technology and Industry on Biofilm for Wastewater Treatment, Pusan, Korea, pp. 47-54, 2000.
• Yashishi Sugano, Ryosuke Nakanao, Katsuya Sasaki, Makoto Shoda. Efficient Heterologous Expression in Aspergillus oryzae of a Unique Dye-Decolorizing Peroxidase DyP of Geotrichum candidum Dec 1, Appl. Environ. Microbiol., Vol. 66, pp. 1754-1758, 2000.
• Tae Ho Lee, Hirokazu Aoki, Yasushi Sugano, Makoto Shoda. Effect of Molasses on the Production and Activity of Dye-Decolorizing Peroxidase from Geotrichum candidum Dec 1, J. Biosci.Bioeng., Vol. 89, pp. 545-549, 2000.
• MAKOTO SHODA. Bacterial Control of Plant Diseases, J. Biosci. Bioeng., Vol. 89, pp. 515-521, 2000.
• Ya-ping Chao, Takehiko Ishida, Yasushi Sugano, Makoto Shoda. Bacterial Cellulose Production by Acetobacter xylinum in a 50-L Internal-Loop Airlift Reactor, Biotechnol. Bioeng., Vol. 68, pp. 345-352, 2000.
• Maki Kondoh, Mitsuyo Hirai, Makoto Shoda. Co-utilization of Bacillus subtilis and Flutolanil in Controlling Damping-off of Tomato Caused by Rhizoctonia solani, Biotechnol. Letts., Vol. 22, pp. 1693-1697, 2000.
• Nam Jin Kim, Yasushi Sugano, Mitsuyo Hirai, Makoto Shoda. Removal Characteristics of High Load Ammonia Gas by a Biofilter Seeded with a Marine Bacterium, Vibrio alginolyticus, Biotechnol.Letts., Vol. 22, pp. 1295-1299, 2000.
• Nam Jin Kim, YASUSHI SUGANO, mitsuyo hirai, MAKOTO SHODA. Removal of a High Load of Ammonia Gas by a Marine Bacterium, Vibrio alginolyticus, J. Biosci. Bioeng., Vol. 90, No. 4, pp. 410-415, 2000.
• Nam Jin Kim, YASUSHI SUGANO, mitsuyo hirai, MAKOTO SHODA. Removal Characteristics of High Load Ammonia Gas by a Biofilter Seeded with a Marine bacterium, Vibrio alginolyticus, Biotechnol. Lett., Vol. 22, pp. 1295-1299, 2000.
• MAKOTO SHODA. Batch Decolorization of Molasses by Suspended and Immobilized Fungus of Geotrichum candidum Dec 1, J. Biosci. Bioeng., Vol. 88, No. 5, pp. 586-589, 1999.
• MAKOTO SHODA. Comparison of Organic and Inorganic Packing Materials in the Removal of Ammonia Gas in Biofilters, J. Hazard. Materials, 1999.
• MAKOTO SHODA. Control of Tomato Damping-off Caused by Rhizoctonia solani by the Heterotrophic Nitrifier Alcaligenes faecalis and Its Product, Hydroxylamine, Ann. Phytopath. Soc. Japan, Vol. 65, No. 2, pp. 153-162, 1999.
• Kenji Tsuge, Takashi Ano, Mitsuyo.Hirai, Yoshiyuki Nakamura, Makoto Shoda. The Genes, degQ, pps and lpa-8 (sfp) are Responsible for Conversion of Bacillus subtilis Strain 168 to Plipastatin Production, Antimicro. Agents Chemother., Vol. 43, pp. 2183-2162, 1999.
• MAKOTO SHODA. High Magnetic Field Enhances Stationary Phase-Specific Transcription Activity of Escherichia coli, Bioelectrochem. Bioenerg., Vol. 48, pp. 383-387, 1999.
• MAKOTO SHODA. Effect of a 7 Tesla Magnetic Fields on Mammalian Cells, Bioelectrochem. Bioenerg., Vol. 49, pp. 57-63, 1999.
• MAKOTO SHODA. Magnetic Field Enhancement of Water Vaporization, J. Appl. Phys., Vol. 86, No. 5, pp. 2923-2925, 1999.
• Makoto SHODA. Production of Microbial Pesticide in Submerged and in Solid State Fermentation, Proceedings of Thirteenth Forum for Applied Biotechnology, pp. 275-280, 1999.
• Makoto SHODA. Recycling of Organic Solid Waste from Food Industry by the Production of Microbial Pesticides to Replace Chemical Pesticides, Proceedings of Regional Symposium on Chemical Engineering 1999, pp. B48-1-B48-6, 1999.
• Seoung Jun Kim, Makoto Shoda. Purification and Characterization of a Novel Peroxidase from Geotrichum candidum Dec 1 Involved in Decolorization of Dyes, Appl. Environ. Microbiol., Vol. 65, No. 3, pp. 1029-1035, 1999.
• MAKOTO SHODA. Decolorization of Molasses and a Dye by a Newly Isolated Strain of the Fungus Geotrichum candidum Dec 1, Biotechnol.Bioeng., Vol. 62, No. 1, pp. 114-119, 1999.
• MAKOTO SHODA. Decolorization of Molasses and a Dye by a Newly Isolated Strain of the Fungus Geotrichum candidum Dec 1, Biotechnol. Bioeng., Vol. 62, No. 1, pp. 114-119, 1999.
• Seong Jun Kim, Makoto Shoda. Purification and Characterization of a Novel Peroxidase from Geotrichum candidum Dec 1 Involved in Decolorization of Dyes, Appl. Environ. Microbiol., Vol. 65, No. 3, pp. 1029-1035, 1999.
• MAKOTO SHODA. Selection and Substantiation of an Organic Solvents Removal Apparatus at a Print Shop by Comparative Experiments Using Activated Carbon Adsorption Method and the Catalytic Oxidation Method, J. Air & Waste Manag. Assoc., Vol. 43, pp. 324-331, 1999.
• MAKOTO SHODA. cDNA Cloning and Genetic Analysis of a Novel Decolorizing Enzyme, Peroxidase Gene dyp from Geotrichum candidum Dec 1, J. Biosci. Bioeng., Vol. 87, pp. 411-417, 1999.
• Koji Tsuchiya, Kazumasa Okuno, Takash Ano, Kan Tanaka, Hideo Takahashi, Makoto Shoda. High magnetic field enhances stationary phase-specific transcription activity of Escherichia coli., Bioelectrochem. Bioenerg., Vol. 48, pp. 383-387, 1999.
• MAKOTO SHODA. A Gene, lpa-14 Involved in Production of Lipopeptide Antibiotics Regulates Production of a Siderophore, 2,3-Dihydorxybemzoylglycine, in Bacillus subtilis RB14, J. Fermentat. Bioeng., Vol. 86, No. 6, pp. 605-607, 1998.
• MAKOTO SHODA. Ammonia Gas Removal Characteristics Using Biofilter with Activated Carbon Fiber as a Carrier, Enviroment. Technol., Vol. 19, pp. 709-715, 1998.
• 中川準, 廣田憲之, 北沢宏一, 正田　誠, 萩原宏康. 水の蒸発に対する磁場効果とその発生機構, 日本応用磁気学会誌, Vol. 22, pp. 825-828, 1998.
• MAKOTO SHODA. Antifungal Effect of a Heterotrophic Nitrifier Alcaligenes faecalis, Biotechnol. Letters, Vol. 20, No. 7, pp. 703-706, 1998.
• MAKOTO SHODA. Isolation of New Variants of Surfaction by a Recombinant Bacillus subtilis, Appl. Microbiol. Biotechnol., Vol. 48, pp. 80-82, 1997.
• MAKOTO SHODA. Production of Bacterial Cellulose by Acetobacter xylinum with an Air-lift Reactor, Biotechnology Techniq., Vol. 11, No. 11, pp. 829-832, 1997.
• MAKOTO SHODA. Effect of High Magnetic Field on the Growth of Bacillus subtilis Measured in a Newly Developed Superconducting Magnet Biosystem, Bioelectrochem. Bioenerg., Vol. 43, No. 1, pp. 123-128, 1997.
• Yaping Chao, YASUSHI SUGANO, Toru Kouda, Fumihiro Yoshinaga, MAKOTO SHODA. Production of bacterial cellulose by Acetobacter xylinum with an air-lift reactor, Biotechnology Techniques, Vol. 11, No. 11, pp. 829-832, 1997.
• Kazuhiro Nakamura, Kazumasa Okuno, Takashi Ano, Makoto Shoda. Effect of high magnetic field on the growth of Bacillus subtilis measured in a newly developed superconducting magnet biosystem., Bioelectrochem. Bioenerg., Vol. 43, pp. 123-128, 1997.
• MAKOTO SHODA. Use of Soybean Curd Residue, Okara, for the Solid State Substrate for the Production of a Lipopeptide Antibiotic, Iturin A, by Bacillus subtilis NB22, Process Biochem., Vol. 31, No. 8, pp. 801-806, 1996.
• MAKOTO SHODA. Persistence of Bacillus subtilis RB14 and Its Derivative Strains in Soil with Respect to 1pa-14 Gene, J. Ferment. Bioeng., Vol. 81, No. 1, pp. 1-6, 1996.
• MAKOTO SHODA. Isolation of a Gene Essential for Biosynthesis of the Lipopeptide Antibiotics Plipastatin B1 and Surfactin in Bacillus subtilis YB8, Arch. Microbiol., Vol. 165, pp. 243-251, 1996.
• MAKOTO SHODA. Effect of High Magnetic Field on Microbial Activities Measured under a Newly Constructed Superconducting Magnet Biosystem, Physica B, Vol. 216, pp. 409-411, 1996.
• MAKOTO SHODA. Biocontrol of Rhizoctonia solani Damping-off of Tomato with Bacillus subtilis RB14, Appl. Environ. Microbiol., Vol. 62, No. 11, pp. 4081-4085, 1996.
• Kazumasa OKUNO, Koji Tsuchiya, TAKASHI ANO, MAKOTO SHODA. Effect of Homogeneous and Inhomogeneous High Magnetic Fields on the Growth of Escherichia coli., J. Ferment. Bioeng., Vol. 81, No. 4, pp. 343-346, 1996.
• MAKOTO SHODA. Prouduction of a Lipopeptide Antibiotics,Surfactin by Recombinant Bacillus subtilis in Solid State Fermentation, Biotechnol. Bioeng., Vol. 47, No. 2, pp. 209-214, 1995.
• MAKOTO SHODA. Survival of Bacillus subtilis NB 22 and its Transformant in Soil, Appl. Soil Ecol., Vol. 2, pp. 85-94, 1995.
• MAKOTO SHODA. New 7T Superconducting Magnet System for Bacterial Cultivation, Cryogenics, Vol. 35, No. 1, pp. 41-47, 1995.
• MAKOTO SHODA. Characteristics of a Newly Isolated Fungus,Geotrichum candidum Dec 1,which decolorizes Various Dyes, J. Ferment. Bioeng., Vol. 79, No. 6, pp. 601-607, 1995.
• MAKOTO SHODA. A Rapid and Simple Method for Plasmid Copy Number Comparison, Biotechnol. Techniq., Vol. 8, No. 12, pp. 865-868, 1994.
• MAKOTO SHODA. A New Cultivation System Operated under Super High Magnetic Field, J. Ferment. Bioeng., Vol. 77, No. 4, pp. 453-456, 1994.
• Kazumasa Okuno, Koji Tsuchiya, Takashi Ano, Makoto Shoda. A New Cultivation System Operated under a Super High Magnetic Field., J. Ferment. Bioeng., Vol. 77, No. 4, pp. 453-456, 1994.
• MAKOTO SHODA. Nucliotide Sequence and Characteristics of a Gene, 1pa-14 Responsible for the Biosynthesis of the Lipopeptide Antibiotics Iturin A and Surfactin from Bacillus subtilis RB14, J. Ferment. Bioeng., Vol. 76, No. 6, pp. 445-450, 1993.
• MAKOTO SHODA. Investigation of Removability of Malodorous Gases from a Night Soil Treatment Plant by Pilot-Scale Peat Biofilter Inoculated with Thiobacillus thioparus DW44, J. Ferment. Bioeng., Vol. 76, No. 1, pp. 55-59, 1993.
• Kazumasa Okuno, Koji Tsuchiya, Takashi Ano, Makoto Shoda. Effect of Super High Magenetic Field on the Growth of Escherichia coli under Various Medium Compositions and Temperatures, J. Ferment. Bioeng., Vol. 75, No. 2, pp. 103-106, 1993.
• MAKOTO SHODA. Isolation of Electric Pulse-Induced Escherichia coli Genes by Operon Fusion Techniques, Biotechnol. Techniq., Vol. 7, No. 10, pp. 719-722, 1993.
• MAKOTO SHODA. Plasmid Instability in Bacillus subtilis during Sporulation, Biosci. Biotechnol. Biochem., Vol. 57, No. 1, pp. 336-337, 1993.
• Kazumasa Okuno, Takashi Ano, Makoto Shoda. Effect of super high magnetic field on the growth of Escherichia coli under varied medium compositions and temperatures., J. Ferment. Bioeng., Vol. 75, No. 2, pp. 103-106, 1993.
• Kazumasa Okuno, Takashi Ano, Makoto Shoda. Effect of super high magnetic field on lysogenic lambda phage with a temperature sensitive repressor., Biotechnol. Lett., Vol. 14, No. 9, pp. 765-768, Sept. 1992.
• MAKOTO SHODA. Degradation of Hydrogen Sulfide by Xanthomonas sp. Strain DY44 Isolated from Peat, Appl. Environ. Microbiol., Vol. 58, No. 4, pp. 1183-1189, 1992.
• MAKOTO SHODA. High-Efficiency Transformation of Bacillus subtillis NB22, an Antifungal Antibiotic Iturin Producer, by Electroporation, J. Ferment. Bioeng., Vol. 73, No. 4, pp. 261-264, 1992.
• MAKOTO SHODA. Transformation of Bacillus subtilis, Antifungal-Antibiotic Iturin Producers with Isolated Antibiotic Resistance Plasmids, J. Gen. Appl. Microbiol., Vol. 38, No. 1, pp. 13-21, 1992.
• Chae Gun Phae, Makoto Shoda, Norihiro Kita, Mitsuyuki Nakano, Kinji Ushiyama. Biological Control of Crown and Root Rot and Bacterial Wilt of Tomato by Bacillus subtilis NB22, Ann. Phytopath. Soc. Japan, Vol. 58, pp. 329-339, 1992.
• MAKOTO SHODA. Production of Antifungal Antibiotic, Iturin in a Solid State Fermentation by Bacillus subtilis NB22 Using a Wheat Bran as a Substrate, Biotechnol. Letts., Vol. 14, No. 9, pp. 817-822, 1992.
• MAKOTO SHODA. Molecular Cloning of a Gene Responsible for the Biosynthesis of the Lipopeptide Antibiotics Iturin and Surfactin, J. Ferment. Bioeng., Vol. 74, No. 5, pp. 323-328, 1992.
• MAKOTO SHODA. Production of a Lipopeptide Antibiotic Surfaction with Recombinant Bacillus subtilis, Biotechnol. Letts., Vol. 14, No. 12, pp. 1165-1168, 1992.
• Hideji Hiraoka, Orie Asaka, Takashi Ano, Makoto Shoda. Characterization of Bacillus subtilis RB14, Coproducer of Peptide Antibiotics Iturin A and Surfactin, J. Gen. Appl Microbiol., Vol. 38, No. 6, pp. 635-640, 1992.
• Yuko Matsuno, Takashi Ano, Makoto Shoda. Cloning of Gene Responsible for the Specific Production of an Antifungal Antibiotic Iturin with n-C 16-Amino Acid Residue, J. Gen. Appl. Microbiol., Vol. 38, No. 5, pp. 505-509, 1992.
• MAKOTO SHODA. Effect of High Magnetic Field on Lysogenic Lambda Phage with a Temperature Sensitive Repressor, Biotechnol. Letts., Vol. 14, No. 9, pp. 765-768, 1992.
• MAKOTO SHODA. Enhanced Removability of Odorous Sulfur-Containing Gases by Mixed Cultures of Purified Bacteria from Peat Biofilter, J. Ferment. Bioeng., Vol. 73, No. 3, pp. 219-224, 1992.
• Kazumasa Okuno, Takashi Ano, Makoto Shoda. Effect of super high magnetic field on the growth of Escherichia coli., Biotechnol. Lett., Vol. 13, No. 10, pp. 745-750, Oct. 1991.
• MAKOTO SHODA. Effect of Super High Magnetic Field on the Growth of Escherichia coli, Biotechnol. Letts., Vol. 13, No. 10, pp. 745-750, 1991.

Book

• 正田　誠. 環境へのアプローチ－グローバルな視点から－, 化学同人, 化学同人, 2003.
• 正田　誠. 生体と電磁界-７磁界と微生物, 学会出版センター, 学会出版センター, pp. 151-169, 2003.
• 正田　誠. バイオレメデｲエーションの基礎と実際-　第１０章染料分解菌, シーエムシー出版, シーエムシー出版, pp. 209-220, 2003.
• 正田　誠. 高磁場は微生物にどのような作用を及ぼすか？, 現代化学, 現代化学, No. 393, pp. 18-21, 2003.
• 正田　誠. 微生物利用の大展開-透析培養- , （株）エヌテーエス, （株）エヌテーエス, pp. 576-578, 2002.
• 正田　誠. 微生物利用の大展開-固体培養- , （株）エヌテーエス, （株）エヌテーエス, pp. 569-571, 2002.
• 正田　誠. 微生物利用の大展開ー高粘性培養ー , （株）エヌテーエス, （株）エヌテーエス, 2002.
• 正田　誠. 磁気科学の新展開 第７章　生命科学における磁場応用　７．４．１微生物, （株）アイピ－シー, （株）アイピ－シー, pp. 459-467, 2002.
• 正田　誠. 微生物を利用した廃水処理技術 , M&E, M&E, Vol. 11, pp. 263-266, 2004.
• 正田　誠. 図解　バイオ活用技術のすべて―― 　　第３章　バイオ環境　３－６．生物農薬, （株）工業調査会, （株）工業調査会, pp. 74-77, 2004.
• MAKOTO SHODA. 生体と電磁界-磁界と微生物, 学会出版センター, 学会出版センター, pp. 151-169, 2003.
• 正田　誠. 理科離れに思う, 三洋化成ニュース, 三洋化成ニュース, Vol. 396, pp. 13, 1999.
• Makoto SHODA, Kazuhiro NAKAMURA, Kohji TSUCHIYA, Kazumasa OKUNO, Takashi ANO. Bacterial Growth under Strong Magnetic Field Electricity and Magnetism in Biology and Medicine, Edited by Bersani, Kuwer Academic/Plenum Publishers, Edited by Bersani, Kuwer Academic/Plenum Publishers, pp. 215-217, 1999.
• MAKOTO SHODA. 高磁場の微生物のおよぼす影響とその遺伝子解析, (財)磁気健康科学研究振興財団平成8・9年度，助成研究成果報告書, (財)磁気健康科学研究振興財団平成8・9年度，助成研究成果報告書, pp. 3-7, 1999.
• MAKOTO SHODA. 環境微生物工学研究法一硫化メチル(DMS)の生物分解(共著), 技報堂出版, 技報堂出版, 1993.
• MAKOTO SHODA. 植物土壌病害の抑止対策-土壌病害拮抗菌の生化学(共著), 博友社, 博友社, 1993.
• MAKOTO SHODA. 微生物工学、Advanced Technology(生物工学編)4章 微生物培養の制御(共著), 丸善, 丸善, 1993.
• MAKOTO SHODA. Basic Analysis of Bacillus subtilis NB22 and its Application to Biological Control, Marcel Dekker Inc., Marcel Dekker Inc., 1992.
• Makoto Shoda. Methods for the Biological Treatment of Exhaust Gases, Elsevier Applied Science, Elsevier Applied Science, 1991.
• MAKOTO SHODA. バイオテクノロジーQ&A, 科学技術社, 科学技術社, 1989.

International Conference (Reviewed)

• Priya Raj Chalise, mohammad shahedur rahman, Hamid Ghomi, MASATO WATANABE, TAKASHI ANO, MAKOTO SHODA, Eiki Hotta. Application of Secondary Emission Electron Gun on Bacterial Inactivation, 3rd Asia-Pacific International Symposium on the Basic and Application of Plasma Technology, Proc. 3rd Asia-Pacific International Symposium on the Basic and Application of Plasma Technology, Vol. P39, pp. 363-366, Dec. 2003.
• Naoto Noro, YASUSHI SUGANO, MAKOTO SHODA. Bacterial cellulose production using buffer capacity in corn steep liquor, Proceedings of Annual conference of Japan Society of Bioscience and Bioengineering 2002, pp. 40, 2002.
• 藤波亮, Kazumasa OKUNO, TAKASHI ANO, MAKOTO SHODA. GASP(Growth Advantage in Stationary Phase)への高磁場の影響, 平成11年度日本生物工学会大会, 日本生物工学会大会講演要旨集, pp. 222, Sept. 1999.
• Koji Tsuchiya, Kazumasa OKUNO, TAKASHI ANO, MAKOTO SHODA. 電気パルス印加に対する Escherichia coli の応答, 日本醗酵工学会1992年度大会, 平成4年度日本醗酵工学会大会講演要旨集, pp. 228, Nov. 1992.

Domestic Conference (Reviewed)

• Koji Tsuchiya, Kazumasa OKUNO, TAKASHI ANO, Kan Tanaka, Hideo Takahashi, MAKOTO SHODA. High magnetic field enhances rpoS transcription of Escherichia coli in stationary phase., 日本生物工学会1999年度大会, 平成11年度日本生物工学会大会講演要旨集, pp. 221, Sept. 1999.

International Conference (Not reviewed / Unknown)

• Kazumasa OKUNO, TAKASHI ANO, MAKOTO SHODA. 均一直流高磁場（11.7T）下における大腸菌の増殖速度へのアミノ酸添加効果, 日本醗酵工学会1991年度大会, 平成3年度日本醗酵工学会大会講演要旨集, pp. 125, Nov. 1991.

Domestic Conference (Not reviewed / Unknown)

• Ryo Fujinami, Kazumasa Okuno, TAKASHI ANO, MAKOTO SHODA. 大腸菌の定常期における生存菌数への高温培養の影響, 日本農芸化学会1999年度大会, 日本農芸化学会誌, Vol. 73, No. 臨時増刊, pp. 82, Mar. 1999.
• Kazumasa OKUNO, Koji Tsuchiya, TAKASHI ANO, MAKOTO SHODA. Escherichia coliの増殖に対する超高磁場（均一直流高磁場）の影響の温度依存性, 日本農芸化学会1992年度大会, 日本農芸化学会誌, Vol. 66, No. 03, pp. 280, Mar. 1992.
• Kazumasa OKUNO, Koji Tsuchiya, TAKASHI ANO, MAKOTO SHODA. エレクトロポーレーションを用いた電気ストレスに対するEscherichia coliの応答の解析, 日本農芸化学会1992年度大会, 日本農芸化学会誌, Vol. 66, No. 03, pp. 147, Mar. 1992.
• Kazumasa OKUNO, TAKASHI ANO, MAKOTO SHODA. λ溶原菌に対する均質直流高磁場の影響, 日本農芸化学会1991年度大会, 日本農芸化学会誌, Vol. 65, No. 03, pp. 131, Mar. 1991.
• Kazumasa OKUNO, TAKASHI ANO, MAKOTO SHODA. 大腸菌の増殖に対する超高磁場(均一直流高磁場）の影響, 日本農芸化学会1990年度大会, 日本農芸化学会誌, Vol. 64, No. 03, pp. 149, Mar. 1990.

Other Publication

• 正田　誠. 高磁場装置,シリーズ｢これからの大学等研究施設　第３編　「環境科学編」, （社）文教施設協会, pp. 223-226, 2006.
• 　正田　誠　菅野靖史. 酵素DyPは新しいペルオキシダーゼか？, 月刊「化学」, Vol. 61, pp. 66-67, 2006.

Patent

• MAKOTO SHODA. 接触槽を併用したアルカリゲネス菌による曝気式脱臭装置. Patent. Registered. 国立大学法人東京工業大学, 山岡環境設計株式会社. 2008/03/28. 特願2008-088389. 2009/10/22. 特開2009-240869. 特許第4487052号. 2010/04/09 2010.
• MAKOTO SHODA. 食塩存在下での脱窒方法. Patent. Registered. 国立大学法人東京工業大学. 2006/10/23. 特願2006-287454. 2008/05/08. 特開2008-104361. 特許第4528981号. 2010/06/18 2010.

Degree

• 酵母の反応速度論解析,  Thesis,  Doctor of Engineering,  東京大学,  1971/--/--, 
• 酵母の反応速度論解析,  Master of Engineering,  東京大学,  1968/--/--, 

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