Journal Paper

• Yuki Kuniyoshi, Kazumitsu Maehara, Takeshi Iwasaki, Masayasu Hayashi, Yuichiro Semba, Masatoshi Fujita, Yuko Sato, Hiroshi Kimura, Akihito Harada, Yasuyuki Ohkawa. Identification of immunoglobulin gene sequences from a small read number of mRNA-seq using hybridomas, PLOS ONE, vol. 11, no. 10, Oct. 2016.
• Y. Sato, T. Kujirai, R. Arai, H. Asakawa, C. Ohtsuki, N. Horikoshi, K. Yamagata, J. Ueda, T. Nagase, T. Haraguchi, Y. Hiraoka, A. Kimura, H. Kurumizaka, H. Kimura. A Genetically Encoded Probe for Live-Cell Imaging of H4K20 Monomethylation, J Mol Biol, Vol. 428, No. 20, pp. 3885-3902, Oct. 2016.
• S. Koide, M. Oshima, K. Takubo, S. Yamazaki, E. Nitta, A. Saraya, K. Aoyama, Y. Kato, S. Miyagi, Y. Nakajima-Takagi, T. Chiba, H. Matsui, F. Arai, Y. Suzuki, H. Kimura, H. Nakauchi, T. Suda, Y. Shinkai, A. Iwama. Setdb1 maintains hematopoietic stem and progenitor cells by restricting the ectopic activation of nonhematopoietic genes, Blood, Vol. 128, No. 5, pp. 638-49, 2016.
• D. Muramatsu, H. Kimura, K. Kotoshiba, M. Tachibana, Y. Shinkai. Pericentric H3K9me3 Formation by HP1 Interaction-defective Histone Methyltransferase Suv39h1, Cell structure and function, Vol. 41, No. 2, pp. 145-152, 2016.
• W. H. Shang, T. Hori, F. G. Westhorpe, K. M. Godek, A. Toyoda, S. Misu, N. Monma, K. Ikeo, C. W. Carroll, Y. Takami, A. Fujiyama, H. Kimura, A. F. Straight, T. Fukagawa. Acetylation of histone H4 lysine 5 and 12 is required for CENP-A deposition into centromeres, Nature communications, Vol. 7, pp. 13465, 2016.
• T. Urahama, A. Harada, K. Maehara, N. Horikoshi, K. Sato, Y. Sato, K. Shiraishi, N. Sugino, A. Osakabe, H. Tachiwana, W. Kagawa, H. Kimura, Y. Ohkawa, H. Kurumizaka. Histone H3.5 forms an unstable nucleosome and accumulates around transcription start sites in human testis, Epigenetics Chromatin, Vol. 9, pp. 2, 2016.
• M. Oka, S. Mura, K. Yamada, P. Sangel, S. Hirata, K. Maehara, K. Kawakami, T. Tachibana, Y. Ohkawa, H. Kimura, Y. Yoneda. Chromatin-prebound Crm1 recruits Nup98-HoxA9 fusion to induce aberrant expression of Hox cluster genes, Elife, Vol. 5, pp. e09540, 2016.
• E. Nakajima, K. Shimaji, T. Umegawachi, S. Tomida, H. Yoshida, N. Yoshimoto, S. Izawa, H. Kimura, M. Yamaguchi. The Histone Deacetylase Gene Rpd3 Is Required for Starvation Stress Resistance, PloS one, Vol. 11, No. 12, pp. e0167554, 2016.
• N. M. Martins, J. H. Bergmann, N. Shono, H. Kimura, V. Larionov, H. Masumoto, W. C. Earnshaw. Epigenetic engineering shows that a human centromere resists silencing mediated by H3K27me3/K9me3, Molecular biology of the cell, Vol. 27, No. 1, pp. 177-96, 2016.
• J. Y. Kaimori, K. Maehara, Y. Hayashi-Takanaka, A. Harada, M. Fukuda, S. Yamamoto, N. Ichimaru, T. Umehara, S. Yokoyama, R. Matsuda, T. Ikura, K. Nagao, C. Obuse, N. Nozaki, S. Takahara, T. Takao, Y. Ohkawa, H. Kimura, Y. Isaka. Histone H4 lysine 20 acetylation is associated with gene repression in human cells, Sci Rep, Vol. 6, pp. 24318, 2016.
• K. Katsushima, A. Natsume, F. Ohka, K. Shinjo, A. Hatanaka, N. Ichimura, S. Sato, S. Takahashi, H. Kimura, Y. Totoki, T. Shibata, M. Naito, H. J. Kim, K. Miyata, K. Kataoka, Y. Kondo. Targeting the Notch-regulated non-coding RNA TUG1 for glioma treatment, Nat Commun, Vol. 7, pp. 13616, 2016.
• M. Goto, N. Toda, K. Shimaji, D. N. Suong, N. Vo, H. Kimura, H. Yoshida, Y. H. Inoue, M. Yamaguchi. Polycomb-dependent nucleolus localization of Jumonji/Jarid2 during, Spermatogenesis, Vol. 6, No. 3, pp. e1232023, 2016.  Official location  
• Y. Kang, J. Wang, A. Neff, S. Kratzer, H. Kimura, R. E. Davis. Differential Chromosomal Localization of Centromeric Histone CENP-A Contributes to Nematode Programmed DNA Elimination, Cell reports, 2016.
• Stunnenberg, H.G., Abrignani, S., Adams, D., de Almeida, M., Altucci, L., Amin, V., Amit, I., Antonarakis, S.E., Aparicio, S., Arima, T., Arrigoni, L., Arts, R., Asnafi, V., Badosa, M.E., Bae, J.-B., Bassler, K., Beck, S., Berkman, B., Bernstein, B.E., Bilenky, M., Bird, A., Bock, C., Boehm, B., Bourque, G., Breeze, C.E., Brors, B., Bujold, D., Burren, O., Bussemakers, M.J., Butterworth, A., Campo, E., Carrillo-de-Santa-Pau, E., Chadwick, L., Chan, K.M., Chen, W., Cheung, T.H., Chiapperino, L., Choi, N.H., Chung, H.-R., Clarke, L., Connors, J.M., Cronet, P., Danesh, J., Dermitzakis, M., Drewes, G., Durek, P., Dyke, S., Dylag, T., Eaves, C.J., Ebert, P., Eils, R., Eils, J., Ennis, C.A., Enver, T., Feingold, E.A., Felder, B., Ferguson-Smith, A., Fitzgibbon, J., Flicek, P., Foo, R.S.-Y., Fraser, P., Frontini, M., Furlong, E., Gakkhar, S., Gasparoni, N., Gasparoni, G., Geschwind, D.H., Glažar, P., Graf, T., Grosveld, F., Guan, X.-Y., Guigo, R., Gut, I.G., Hamann, A., Han, B.-G., Harris, R.A., Heath, S., Helin, K., Hengstler, J.G., Heravi-Moussavi, A., Herrup, K., Hill, S., Hilton, J.A., Hitz, B.C., Horsthemke, B., Hu, M., Hwang, J.-Y., Ip, N.Y., Ito, T., Javierre, B.-M., Jenko, S., Jenuwein, T., Joly, Y., Jones, S.J.M., Kanai, Y., Kang, H.G., Karsan, A., Kiemer, A.K., Kim, S.C., Kim, B.-J., Kim, H.-H., Kimura, H., Kinkley, S., Klironomos, F., Koh, I.-U., Kostadima, M., Kressler, C., Kreuzhuber, R., Kundaje, A., Küppers, R., Larabell, C., Lasko, P., Lathrop, M., Lee, D.H.S., Lee, S., Lehrach, H., Leitão, E., Lengauer, T., Lernmark, Å., Leslie, R.D., Leung, G.K.K., Leung, D., Loeffler, M., Ma, Y., Mai, A., Manke, T., Marcotte, E.R., Marra, M.A., Martens, J.H.A., Martin-Subero, J.I., Maschke, K., Merten, C., Milosavljevic, A., Minucci, S., Mitsuyama, T., Moore, R.A., Müller, F., Mungall, A.J., Netea, M.G., Nordström, K., Norstedt, I., Okae, H., Onuchic, V., Ouellette, F., Ouwehand, W., Pagani, M., Pancaldi, V., Pap, T., Pastinen, T., Patel, R., Paul, D.S., Pazin, M.J., Pelicci, P.G., Phillips, A.G., Polansky, J., Porse, B., Pospisilik, J.A., Prabhakar, S., Procaccini, D.C., Radbruch, A., Rajewsky, N., Rakyan, V., Reik, W., Ren, B., Richardson, D., Richter, A., Rico, D., Roberts, D.J., Rosenstiel, P., Rothstein, M., Salhab, A., Sasaki, H., Satterlee, J.S., Sauer, S., Schacht, C., Schmidt, F., Schmitz, G., Schreiber, S., Schröder, C., Schübeler, D., Schultze, J.L., Schulyer, R.P., Schulz, M., Seifert, M., Shirahige, K., Siebert, R., Sierocinski, T., Siminoff, L., Sinha, A., Soranzo, N., Spicuglia, S., Spivakov, M., Steidl, C., Strattan, J.S., Stratton, M., Südbeck, P., Sun, H., Suzuki, N., Suzuki, Y., Tanay, A., Torrents, D., Tyson, F.L., Ulas, T., Ullrich, S., Ushijima, T., Valencia, A., Vellenga, E., Vingron, M., Wallace, C., Wallner, S., Walter, J., Wang, H., Weber, S., Weiler, N., Weller, A., Weng, A., Wilder, S., Wiseman, S.M., Wu, A.R., Wu, Z., Xiong, J., Yamashita, Y., Yang, X., Yap, D.Y., Yip, K.Y., Yip, S., Yoo, J.-I., Zerbino, D., Zipprich, G., Hirst, M., Hiroshi Kimura. The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery, Cell, Vol. 167, No. 5, pp. 1145-1149, 2016.  Official location  
• T. Kujirai, N. Horikoshi, K. Sato, K. Maehara, S. Machida, A. Osakabe, H. Kimura, Y. Ohkawa, H. Kurumizaka. Structure and function of human histone H3.Y nucleosome, Nucleic acids research, Vol. 44, No. 13, pp. 6127-41, 2016.
• J. Ohzeki, N. Shono, K. Otake, N. M. Martins, K. Kugou, H. Kimura, T. Nagase, V. Larionov, W. C. Earnshaw, H. Masumoto. KAT7/HBO1/MYST2 Regulates CENP-A Chromatin Assembly by Antagonizing Suv39h1-Mediated Centromere Inactivation, Developmental cell, Vol. 37, No. 5, pp. 413-27, 2016.
• K. Shimaji, T. Konishi, H. Yoshida, H. Kimura, M. Yamaguchi. Genome-wide genetic screen identified the link between dG9a and epidermal growth factor receptor signaling pathway in vivo, Experimental cell research, Vol. 346, No. 1, pp. 53-64, 2016.
• M. Suzuki, C. Takagi, S. Miura, Y. Sakane, T. Sakuma, N. Sakamoto, T. Endo, Y. Kamei, Y. Sato, H. Kimura, T. Yamamoto, N. Ueno, K. T. Suzuki. In vivo tracking of histone H3 lysine 9 acetylation in Xenopus laevis during tail regeneration, Genes Cells, Vol. 21, No. 4, pp. 358-69, 2016.  Official location  
• S. Suzuki, H. Kato, Y. Suzuki, Y. Chikashige, Y. Hiraoka, H. Kimura, K. Nagao, C. Obuse, S. Takahata, Y. Murakami. Histone H3K36 trimethylation is essential for multiple silencing mechanisms in fission yeast, Nucleic acids research, Vol. 44, No. 9, pp. 4147-62, 2016.
• R. Hansel-Hertsch, D. Beraldi, S. V. Lensing, G. Marsico, K. Zyner, A. Parry, M. Di Antonio, J. Pike, H. Kimura, M. Narita, D. Tannahill, S. Balasubramanian. G-quadruplex structures mark human regulatory chromatin, Nature genetics, 2016.

Book

• Hiroshi Kimura, 田代聡. ヌクレオソーム解析時代の幕開け, 細胞工学, 学研メディカル秀潤社, Vol. 35, No. 2, p. 66－69, 2016.
• Hiroshi Kimura. 遺伝子活性化のしくみの生きた細胞内での観察, パリティ, 丸善出版株式会社, Vol. 31, No. 1, p. 70－72, 2016.
• Hiroshi Kimura, Yuko Sato. DNA replication and histone modification, DNA Replication, Recombination, and Repair: Molecular Mechanisms and Pathology, pp. 469-488, 2016.

International Conference (Reviewed)

• Handoko, L., Chang, J., Kaczkowski, B., Fujita, K., Lizio, M., Sato, Y., Wakamori, M., Hiroshi Kimura, Taniguchi, Y., Yanagida, T., Umehara, T., Minoda, A.. Studying combinatorial histone modifications, Annual Meeting of the American-Society-for-Cell-Biology (ASCB), MOLECULAR BIOLOGY OF THE CELL, AMER SOC CELL BIOLOGY, Vol. 27, 2016.

Domestic Conference (Reviewed)

• Nagao, Koji, Isobe, Shin-Ya, Ohkubo, Yoshi-Nobu, Hayashi-Takanaka, Yoko, Hiroshi Kimura, Sado, Takashi, Obuse, Chikashi. Constitution of Higher Order Heterochromatin Structure Based on Epigenetic Code, GENES & GENETIC SYSTEMS, GENETICS SOC JAPAN, Vol. 91, No. 6, pp. 318-318, Dec. 2016.
• Kajitani, Takuya, Kato, Hiroaki, Chikashige, Yuji, Hiroshi Kimura, Ohkawa, Yasuyuki, Herand, Damien, Murakami, Yota. Phosphorylation at Ser7 of RNA polymerase II CTD limits transcription speed and transcription elongation, GENES & GENETIC SYSTEMS, GENETICS SOC JAPAN, Vol. 91, No. 6, pp. 348-348, Dec. 2016.
• Yuma Ito, Masahiko Harada, Hiroshi Kimura, Kumiko Sakata-Sogawa, makio tokunaga. １分子イメージングとFRAPによるINO80クロマチン再構成複合体の核内動態解析, 第8回「光塾」, Dec. 2016.
• Tsubasa Isogaki, Yuma Ito, Shota Ichikawa, Hiroshi Kimura, Masahiko Harata, Kumiko Sakata-Sogawa, Makio Tokunaga. Fluorescence recovery after photobleaching(FRAP) analysis of INO80 chromatin remodeling complex, The 54th Annual Meeting of the Biophysical Society of Japan, Nov. 2016.
• Hiroshi Kimura, 我妻 慶祐, 寺田 晃士, 田中 裕之, 伊川 友活, 増田 喬子, 河本 宏, Hiroshi Kimura. Chromosome Dynamics of the T cell Receptor Locus Induced by E2A Transcription Factor Foci, The 10th Annual Meeting of the Japanese Society for Epigenetics, 2016.
• 白井 温子, 川口 隆之, 村松 大輔, 石田 真由美, Hiroshi Kimura, 中山 潤一, 眞貝 洋一. Elucidation of the mechanism underlying heterochromatin formation mediated by histone methyltransferase Suv39h1, The 10th Annual Meeting of the Japanese Society for Epigenetics, 2016.
• 桝本 寛, 庄野 暢晃, 大関 潤一郎, 大竹 興一郎, 長瀬 隆弘, Hiroshi Kimura, Larionov Vladimir, Earnshaw William C. Analysis of centromeric chromatin assembly using synthetic DNA and tetO/tetR tethering system, The 10th Annual Meeting of the Japanese Society for Epigenetics, 2016.
• 大関 淳一郎, 庄野 暢晃, 大竹 興一郎, 久郷 和人, Hiroshi Kimura, 長瀬 隆弘, LarionovVladimir, William Earnshaw, 桝本 寛. KAT7 acethltransferase counteracts heterochromatin spreading via histone turnover/exchange reaction that provides sufficient CENP-A assembly, 2016.
• 梶谷 卓也, 加藤 太陽, 近重 裕次, 平岡 泰, 鈴木 穣, Hiroshi Kimura, 大川 恭行, 小布施 力史, Hermand damien, 村上 洋太. Ser7 phosphorylation of RNAPⅡ-CTD facilitates hetrochromatin formation by linking neRNA to RNAi via transcription speed regulation, The 10th Annual Meeting of the Japanese Society for Epigenetics, 2016.
• Hiroshi Kimura, 林 陽子, 大川 恭行, 野崎 直仁. Localization and dynamics of unmodified histone H3 as revealed by specific monoclonal antibodies, The 10th Annual Meeting of the Japanese Society for Epigenetics, 2016.
• 佐藤 優子, 鯨井 智也, 堀越 直樹, 胡桃坂 仁志, Hiroshi Kimura. Live-cell imaging for H4K20 monomethylation using mintbody probe, The 10th Annual Meeting of the Japanese Society for Epigenetics, 2016.
• 林 陽子, Hiroshi Kimura. Single cell analysis reveals dynamics of histone modification and the effects of modification/demodification enzymes during cell cycle, The 10th Annual Meeting of the Japanese Society for Epigenetics, 2016.
• 半田 哲也, Hiroshi Kimura. Kinetic Analysis of Histone Modifications and RNA PolymeraseⅡusing Modification Specific, The 10th Annual Meeting of the Japanese Society for Epigenetics, 2016.

Domestic Conference (Not reviewed / Unknown)

• Azusa Kambe, Nobuaki Shiraki, Hiroshi Kimura, Shoen Kume. ヒトiPS細胞におけるメチオニン代謝とヒストン修飾の役割, 第39回日本分子生物学会年会, Dec. 2016.

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