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北尾彰朗 2021年 研究業績一覧 (27件 / 189件)
論文
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Steven Hayward,
Akio Kitao.
The role of the half-turn in determining structures of Alzheimer’s Aβ wild-type and mutants,
Journal of Structural Biology,
Vol. 213,
No. 4,
pp. 107792,
Dec. 2021.
公式リンク
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Hiroaki Hata,
Duy Phuoc Tran,
Marzouk,
Akio Kitao.
Binding free energy of protein/ligand complexes calculated using dissociation Parallel Cascade Selection Molecular Dynamics and Markov state model,
Biophysics and Physicobiology,
Dec. 2021.
公式リンク
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Takeo Yamawaki,
Misao Mizuno,
Haruto Ishikawa,
Kazuhiro Takemura,
Akio Kitao,
Yoshitsugu Shiro,
Yasuhisa Mizutani.
Regulatory Switching by Concerted Motions on the Microsecond Time Scale of the Oxygen Sensor Protein FixL,
The Journal of Physical Chemistry B,
Vol. 125,
No. 25,
pp. 6847-6856,
June 2021.
公式リンク
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Duy Phuoc Tran,
Akio Kitao.
Using molecular dynamics simulations to prioritize and understand AI-generated cell penetrating peptides,
Scientific Reports,
Vol. 11,
No. 1,
May 2021.
公式リンク
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Akio Kitao.
Delineating the conformational landscape of the adenosine A2A receptor during G protein coupling.,
Cell,
Mar. 2021.
公式リンク
国際会議発表 (査読なし・不明)
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Akio Kitao.
Transport mechanisms of ions, peptides and proteins through the biological membrane,
Pacific Basin Societies 2021,
Dec. 2021.
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Akio Kitao.
Roles of hydration/dehydration for dissociation, association and stabilization of protein complexes,
Pacific Basin Societies 2021,
Dec. 2021.
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Akio Kitao.
PaCS-MD/MSM to investigate protein motions and association/dissociation of protein complexes,
Symposium on Computer Simulations and Cryo-ET/EM of Complex Biomolecular Systems,
Nov. 2021.
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Duy Phuoc Tran,
Akio Kitao.
Atomic mechanism of the complete association of intrinsically disordered peptide to protein,
XXXII IUPAP Conference on Computational Physics(CCP2021),
Aug. 2021.
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Duy Tran,
Akio Kitao.
Predicting the complex conformations of protein/intrinsically disordered peptide complexes,
The Protein Society-35th Anniversary Symposium,
July 2021.
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Akio Kitao.
Simulated dissociation/association dynamics between proteins and other molecules,
Telluride Science Research Center Workshop on Protein Dynamics,
July 2021.
国内会議発表 (査読なし・不明)
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Ryunosuke Kiuchi,
Kazuhiro Takemura,
Akio Kitao.
Application of ColDock to docking of cryptic pockets,
59th Annual Meeting of Biophysical Society of Japan,
Nov. 2021.
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Akio Kitao.
Molecular movie of protein association/dissociation dynamics,
59th Annual Meeting of Biophysical Society of Japan,
Nov. 2021.
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Kazuhiro Takemura,
Akio Kitao.
Unguided Binding MD of Protein-Protein Complexes by PPI-ColDock,
59th Annual Meeting of Biophysical Society of Japan,
Nov. 2021.
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Duy Tran,
Akio Kitao.
DNA bending enhances the dissociation of tetrameric p53’s coredomains,
59th Annual Meeting of Biophysical Society of Japan,
Nov. 2021.
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Duy Phuoc Tran,
Akio Kitao.
Binding free energy calculation with dPaCS-MD/MSM,
C2C Program Kick off symposium,
Oct. 2021.
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チャン フ ズイ,
畑 宏明,
中矢 光,
北尾彰朗.
Benchmarking the free energy calculation of PaCS-MD/MSM,
第21回日本蛋白質科学会年会,
June 2021.
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北尾彰朗.
インシリコシミュレーションで探るタンパク質複合体の結合親和性とキネティックス,
構造活性フォーラム2021「次期スーパーコンピュータ「富岳」時代の計算創薬」,
June 2021.
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Marzouk,
Akio Kitao.
Investigating the dissociation process and kinetic rates of DBD-p53/DNA complex by PaCS-MD and MSM,
第21回日本蛋白質科学会年会,
June 2021.
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竹村 和浩,
北尾 彰朗.
PPI-ColDock 法を用いた蛋白質‐ 蛋白質複合体形成,
第21回日本蛋白質科学会年会,
June 2021.
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宮澤 佳希,
Tran Phuoc Duy,
竹村 和浩,
北尾 彰朗.
Parallel Cascade Selection Molecular Dynamics/Markov State Model によるタンパク質-タンパク質複合体の結合親和性評価 (Evaluation of binding affinity for protein-protein complexes by Parallel Cascade Selection Molecular Dynamics/Markov State Model,
第21回日本蛋白質科学会年会,
June 2021.
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Wijaya Tegar N.,
北尾彰朗.
Dynamics of Close-Open State of CALB Obtained by Parallel Cascade Molecular Dynamics Simulation and The 2.Wijaya Tegar N.、北尾彰朗「Dynamics of Close-Open State of CALB Obtained by Parallel Cascade Molecular Dynamics Simulation and The Markov State Model,
第21回日本蛋白質科学会年会,
June 2021.
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北尾彰朗.
SARS-CoV-2 エンドリボヌクレアーゼのオリゴマー化阻害,
Apr. 2021.
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Mariko Kojima,
Yuki Hishikawa,
Satoshi Abe,
Tadaomi Furuta,
Duy Phuoc Tran,
Akio Kitao,
Takafumi Ueno.
Energy Analysis of Miniprotein by in Vivo Protein Crystallization,
日本化学会第101春季年会,
Mar. 2021.
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Tegar Nurwahyu Wijaya,
Akio Kitao.
Dynamics of Close-Open State of Candida antarctica Lipase B Obtained by Parallel Cascade Molecular Dynamics Simulation and The Markov State Model,
第10回日本生物物理学会関東支部会,
Mar. 2021.
その他の論文・著書など
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Duy Phuoc Tran,
Akio Kitao.
Calculation of Binding Free Energy and Kinetic Rates with Flexible Protein Docking,
Seibutsu Butsuri,
Vol. 61,
No. 6,
pp. 398-399,
Nov. 2021.
公式リンク
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北尾 彰朗.
東京工業大学生命理工学院 北尾研究室,
アンサンブル,
分子シミュレーション学会,
Vol. 23,
No. 1,
pp. 67-71,
Jan. 2021.
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