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Publication List - Tatsuya Niwa (57 entries)
Journal Paper
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Matsumoto R,
Niwa T,
Shimane Y,
Kuruma Y,
Hideki Taguchi,
Takashi Kanamori.
Regulated N-Terminal Modification of Proteins Synthesized Using a Reconstituted Cell-Free Protein Synthesis System.,
ACS synthetic biology,
June 2023.
Official location
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Inoue R,
Yosuke Fukutani,
Niwa T,
Matsunami H,
Masafumi Yohda.
Identification and Characterization of Proteins That Are Involved in RTP1S-Dependent Transport of Olfactory Receptors.,
International journal of molecular sciences,
Apr. 2023.
Official location
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Minami S,
Niwa T,
Uemura E,
Koike R,
Taguchi H,
Motonori Ota.
Prediction of chaperonin GroE substrates using small structural patterns of proteins.,
FEBS open bio,
Mar. 2023.
Official location
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Haruka Onodera,
Tatsuya Niwa,
Hideki Taguchi,
Yuhei Chadani.
Prophage excision switches the primary ribosome rescue pathway and rescue‐associated gene regulations in Escherichia coli,
Molecular Microbiology,
Jan. 2023.
Official location
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Yamakawa A,
Niwa T,
Chadani Y,
Kobo A,
Hideki Taguchi.
A method to enrich polypeptidyl-tRNAs to capture snapshots of translation in the cell.,
Nucleic acids research,
Jan. 2023.
Official location
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Yosuke Ito,
Yuhei Chadani,
Tatsuya Niwa,
Ayako Yamakawa,
Kodai Machida,
Hiroaki Imataka,
Hideki Taguchi.
Nascent peptide-induced translation discontinuation in eukaryotes impacts biased amino acid usage in proteomes,
Nature Communications,
Dec. 2022.
Official location
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Tatsuya Niwa,
Nakazawa K,
Hoshi K,
Tadakuma H,
Ito K,
Taguchi H.
Application of fluorescence correlation spectroscopy to investigate the dynamics of a ribosome-associated trigger factor in Escherichia coli.,
Frontiers in molecular biosciences,
Aug. 2022.
Official location
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Tatsuya Niwa,
Yuhei Chadani,
Hideki Taguchi.
Shotgun Proteomics Revealed Preferential Degradation of Misfolded In Vivo Obligate GroE Substrates by Lon Protease in Escherichia coli,
Molecules,
June 2022.
Official location
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Nakagawa Y,
Shen HC,
Komi Y,
Shinju Sugiyama,
Kurinomaru T,
Tomabechi Y,
Krayukhina E,
Kenji Okamoto,
Yokoyama T,
Mikako Shirouzu,
Uchiyama S,
Inaba M,
Tatsuya Niwa,
Yasushi Sako,
Hideki Taguchi,
Motomasa Tanaka.
Amyloid conformation-dependent disaggregation in a reconstituted yeast prion system.,
Nature chemical biology,
Feb. 2022.
Official location
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Tsushima M,
Shinichi Sato,
Kazuki Miura,
Tatsuya Niwa,
Taguchi H,
Hiroyuki Nakamura.
Intracellular photocatalytic-proximity labeling for profiling protein-protein interactions in microenvironments.,
Chemical communications (Cambridge, England),
Feb. 2022.
Official location
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Hirai K,
Yamashita H,
Shusuke TOMOSHIGE,
Mishima Y,
Tatsuya Niwa,
Kenji Ohgane,
Ishii M,
Kanamitsu K,
Ikemi Y,
Nakagawa S,
Hideki Taguchi,
Shinichi Sato,
Hashimoto Y,
Minoru Ishikawa.
Conversion of a PROTAC Mutant Huntingtin Degrader into Small-Molecule Hydrophobic Tags Focusing on Drug-like Properties.,
ACS medicinal chemistry letters,
Feb. 2022.
Official location
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Yuhei Chadani,
Sugata N,
Tatsuya Niwa,
Ito Y,
Shintaro Iwasaki,
Hideki Taguchi.
Nascent polypeptide within the exit tunnel stabilizes the ribosome to counteract risky translation.,
The EMBO journal,
Oct. 2021.
Official location
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Deschoenmaeker F,
Mihara S,
Tatsuya Niwa,
Taguchi H,
Ken-ichi Wakabayashi,
Toyoshima M,
Shimizu H,
Hisabori T.
Thioredoxin pathway in Anabaena sp. PCC 7120: activity of NADPH-thioredoxin reductase C.,
Journal of biochemistry,
Sept. 2021.
Official location
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Hitoki Nanaura,
Kawamukai H,
Fujiwara A,
Uehara T,
Yuichiro Aiba,
Nakanishi M,
Shiota T,
Hibino M,
Pattama Wiriyasermkul,
Kikuchi S,
Riko Nagata,
Masaya Matsubayashi,
Yoichi Shinkai,
Tatsuya Niwa,
Taro Mannen,
Naritaka Morikawa,
Iguchi N,
Takao Kiriyama,
Ken Morishima,
Inoue R,
Masaaki Sugiyama,
Oda T,
Kodera N,
Toma-Fukai S,
Sato M,
Hideki Taguchi,
Shushi Nagamori,
Osami Shoji,
Koichiro Ishimori,
Hiroyoshi Matsumura,
Sugie K,
Tomohide Saio,
Yoshizawa T,
Eiichiro Mori.
C9orf72-derived arginine-rich poly-dipeptides impede phase modifiers.,
Nature communications,
Sept. 2021.
Official location
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Tony Z. Jia,
Po-Hsiang Wang,
Tatsuya Niwa,
Irena Mamajanov.
Connecting Primitive Phase Separation to Biotechnology,
Journal of Biosciences,
Vol. 46,
Aug. 2021.
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Tomohiro Shimada,
Kohta Nakazawa,
Tomoyuki Tachikawa,
Natsumi Saito,
Tatsuya Niwa,
Hideki Taguchi,
Kan Tanaka.
Acetate overflow metabolism regulates a major metabolic shift after glucose depletion in Escherichia coli,
FEBS Letters,
Aug. 2021.
Official location
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Keita Nakane,
Shinichi Sato,
Tatsuya Niwa,
Tsushima M,
Shusuke TOMOSHIGE,
Hideki Taguchi,
Minoru Ishikawa,
Hiroyuki Nakamura.
Proximity Histidine Labeling by Umpolung Strategy Using Singlet Oxygen.,
Journal of the American Chemical Society,
Apr. 2021.
Official location
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Aleksandar Zdravković,
James M. Daley,
Arijit Dutta,
Tatsuya Niwa,
Yasuto Murayama,
Shuji Kanamaru,
Kentaro Ito,
Takahisa Maki,
Bilge Argunhan,
Masayuki Takahashi,
Hideo Tsubouchi,
Patrick Sung,
Hiroshi Iwasaki.
A conserved Ctp1/CtIP C-terminal peptide stimulates Mre11 endonuclease activity,
Proceedings of the National Academy of Sciences of the United States of America,
National Academy of Sciences,
Vol. 118,
No. 11,
e2016287118,
Mar. 2021.
Official location
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Shinya Sugimoto,
Kunitoshi Yamanaka,
Tatsuya Niwa,
Yurika Terasawa,
Yuki Kinjo,
Yoshimitsu Mizunoe,
Teru Ogura.
Hierarchical Model for the Role of J-Domain Proteins in Distinct Cellular Functions,
Journal of Molecular Biology,
Elsevier,
Volume 433,
Issue 3,
Feb. 2021.
Official location
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Mai Duy Luu Trinh,
Daichi Miyazaki,
Sumire Ono,
Jiro Nomata,
Masaru Kono,
Hiroyuki Mino,
Tatsuya Niwa,
Yuki Okegawa,
Ken Motohashi,
Hideki Taguchi,
Toru Hisabori,
Shinji Masuda.
The evolutionary conserved iron-sulfur protein TCR controls P700 oxidation in photosystem I,
iScience,
Feb. 2021.
Official location
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Masuzawa T,
Shinichi Sato,
Tatsuya Niwa,
Taguchi H,
Hiroyuki Nakamura,
Takanori Oyoshi.
G-quadruplex-proximity protein labeling based on peroxidase activity.,
Chemical communications (Cambridge, England),
Sept. 2020.
Official location
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Daiki Kashiwagi,
Hao K Shen,
Seunghyun Sim,
Koki Sano,
Yasuhiro Ishida,
Ayumi Kimura,
Tatsuya Niwa,
Hideki Taguchi,
Takuzo Aida.
Molecularly Engineered "Janus GroEL": Application to Supramolecular Copolymerization with a Higher Level of Sequence Control.,
Journal of the American Chemical Society,
July 2020.
Official location
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Tony Z Jia,
Kosuke Fujishima,
Tatsuya Niwa.
液ー液相分離と生命の起源,
生物工学会誌,
98,
5,
236-240,
May 2020.
Official location
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Mikihisa Muta,
Ryo Iizuka,
Tatsuya Niwa,
Yuanfang Guo,
Hideki Taguchi,
Takashi Funatsu.
Nascent SecM chain interacts with outer ribosomal surface to stabilize translation arrest.,
The Biochemical journal,
Vol. 477,
No. 2,
pp. 557-566,
Jan. 2020.
Official location
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Michihiko Tsushima,
Shinichi Sato,
Tatsuya Niwa,
HIDEKI TAGUCHI,
Hiroyuki Nakamura.
Catalyst-proximity protein chemical labelling on affinity beads targeting endogenous lectins.,
Chemical communications (Cambridge, England),
Vol. 55,
No. 88,
Page 13275-13278,
Oct. 2019.
Official location
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Tatsuya Niwa,
Eri Uemura,
Yuki Matsuno,
Hideki Taguchi.
Translation-coupled protein folding assay using a protease to monitor the folding status.,
Protein Science,
Vol. 28,
No. 7,
Page 1252-1261,
July 2019.
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Frederic Deschoenmaeker,
Shoko Mihara,
Tatsuya Niwa,
HIDEKI TAGUCHI,
Jiro Nomata,
Ken-Ichi Wakabayashi,
TORU HISABORI.
Disruption of the gene trx-m1 impedes the growth of Anabaena sp. PCC 7120 under nitrogen starvation,
Plant and Cell Physiology (PCP),
Apr. 2019.
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Frederic Deschoenmaeker,
Shoko Mihara,
Tatsuya Niwa,
HIDEKI TAGUCHI,
Ken-Ichi Wakabayashi,
TORU HISABORI.
The absence of thioredoxin m1 and thioredoxin C in Anabaena sp. PCC 7120 leads to oxidative stress.,
Plant and Cell Physiology (PCP),
Vol. 59,
No. 12,
pp. 2432-2441,
Dec. 2018.
Official location
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Nojima Tatsuya,
Tatsuya Niwa,
HIDEKI TAGUCHI.
Proteome Analysis of Phase-Separated Condensed Proteins with Ionic Surfactants Revealed Versatile Formation of Artificial Bio-molecular Condensates,
Biomacromolecules,
Dec. 2018.
Official location
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Sugita Saori,
Watanabe Kumiko,
Hashimoto Kana,
Tatsuya Niwa,
Uemura Eri,
HIDEKI TAGUCHI,
Watanabe Yo-hei.
Electrostatic interactions between middle domain motif-1 and the AAA1 module of the bacterial ClpB chaperone are essential for protein disaggregation,
The Journal of biological chemistry,
Vol. 293,
No. 50,
pp. 19228-19239,
Oct. 2018.
Official location
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Uemura Eri,
Tatsuya Niwa,
Minami Shintaro,
Takemoto Kazuhiro,
Fukuchi Satoshi,
Machida Kodai,
Imataka Hiroaki,
Ueda Takuya,
Ota Motonori,
Hideki Taguchi.
Large-scale aggregation analysis of eukaryotic proteins reveals an involvement of intrinsically disordered regions in protein folding,
Scientific reports,
Vol. 8,
No. 1,
pp. 678,
Jan. 2018.
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Kashiwagi D,
Sim S,
Tatsuya Niwa,
HIDEKI TAGUCHI,
Aida T.
Protein Nanotube Selectively Cleavable with DNA: Supramolecular Polymerization of "DNA-Appended Molecular Chaperones",
Journal of the American Chemical Society,
Vol. 140,
No. 1,
pp. 26-29,
Jan. 2018.
Official location
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Fujiwara K,
Sawamura T,
Tatsuya Niwa,
Deyama T,
Nomura SM,
HIDEKI TAGUCHI,
Doi N.
In vitro transcription-translation using bacterial genome as a template to reconstitute intracellular profile,
Nucleic acids research,
Vol. 45,
No. 19,
pp. 11449-11458,
Nov. 2017.
Official location
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Yuhei Chadani,
Tatsuya Niwa,
Takashi Izumi,
Nobuyuki Sugata,
Asuteka Nagao,
Tsutomu Suzuki,
Shinobu Chiba,
Koreaki Ito,
Hideki Taguchi.
Intrinsic Ribosome Destabilization Underlies Translation and Provides an Organism with a Strategy of Environmental Sensing,
Molecular cell,
Vol. 68,
No. 3,
pp. 528-539.e5,
Nov. 2017.
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Seunghyun Sim,
Tatsuya Niwa,
Aida Takuzo,
HIDEKI TAGUCHI.
Supramolecular Nanotube of Chaperonin GroEL: Length Control for Cellular Uptake Using Single-Ring GroEL Mutant as End-Capper,
Journal of the American Chemical Society,
Vol. 138,
No. 35,
pp. 11152-11155,
Sept. 2016.
Official location
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Chadani Yuhei,
Tatsuya Niwa,
Chiba Shinobu,
HIDEKI TAGUCHI,
Ito Koreaki.
Integrated in vivo and in vitro nascent chain profiling reveals widespread translational pausing,
Proceedings of the National Academy of Sciences of the United States of America,
Vol. 113,
No. 7,
pp. E829-E838,
Aug. 2016.
Official location
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Tatsuya Niwa,
Fujiwara Kei,
HIDEKI TAGUCHI.
Identification of novel in vivo obligate GroEL/ES substrates based on data from a cell-free proteomics approach,
FEBS letters,
Vol. 590,
No. 2,
pp. 251-257,
Jan. 2016.
Official location
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Tatsuya Niwa,
Sasaki Yoshihiro,
Uemura Eri,
Nakamura Shugo,
Akiyama Minato,
Ando Mitsuru,
Sawada Shinichi,
Mukai Sada-atu,
Ueda Takuya,
HIDEKI TAGUCHI,
Akiyoshi Kazunari.
Comprehensive study of liposome-assisted synthesis of membrane proteins using a reconstituted cell-free translation system,
Scientific reports,
Vol. 5,
pp. 18025,
Dec. 2015.
Official location
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Tatsuya Niwa,
Sugimoto Ryota,
Watanabe Lisa,
Nakamura Shugo,
Ueda Takuya,
HIDEKI TAGUCHI.
Large-scale analysis of macromolecular crowding effects on protein aggregation using a reconstituted cell-free translation system,
Frontiers in microbiology,
Vol. 6,
pp. 1113,
July 2015.
Official location
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Sim Seunghyun,
Miyajima Daigo,
Tatsuya Niwa,
HIDEKI TAGUCHI,
Aida Takuzo.
Tailoring Micrometer-Long High-Integrity 1D Array of Superparamagnetic Nanoparticles in a Nanotubular Protein Jacket and Its Lateral Magnetic Assembling Behavior,
Journal of the American Chemical Society,
Vol. 137,
No. 14,
pp. 4658-4661,
Apr. 2015.
Official location
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Okuda Momoko,
Tatsuya Niwa,
HIDEKI TAGUCHI.
Single-molecule Analyses of the Dynamics of Heat Shock Protein 104 (Hsp104) and Protein Aggregates,
Journal of Biological Chemistry,
Vol. 290,
No. 12,
pp. 7833-7840,
Mar. 2015.
Official location
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Ishimoto Takuya,
Fujiwara Kei,
Tatsuya Niwa,
HIDEKI TAGUCHI.
Conversion of a chaperonin GroEL-independent protein into an obligate substrate,
Journal of Biological Chemistry,
Vol. 289,
No. 46,
pp. 32073-32080,
Nov. 2014.
Official location
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Biswas Shuvendu,
Kinbara Kazushi,
Tatsuya Niwa,
HIDEKI TAGUCHI,
Ishii Noriyuki,
Watanabe Sumiyo,
Miyata Kanjiro,
Kataoka Kazunori,
Aida Takuzo.
Biomolecular robotics for chemomechanically driven guest delivery fuelled by intracellular ATP,
Nature chemistry,
Vol. 5,
No. 7,
pp. 613-620,
July 2013.
Official location
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Tatsuya Niwa,
Kanamori Takashi,
Ueda Takuya,
HIDEKI TAGUCHI.
Global analysis of chaperone effects using a reconstituted cell-free translation system,
Proceedings of the National Academy of Sciences of the United States of America,
Vol. 109,
No. 23,
pp. 8937-8942,
June 2012.
Official location
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Sasaki Yoshihiro,
Asayama Wakiko,
Tatsuya Niwa,
Sawada Shin-ichi,
Ueda Takuya,
Akiyoshi Kazunari,
HIDEKI TAGUCHI.
Amphiphilic polysaccharide nanogels as artificial chaperones in cell-free protein synthesis,
Macromolecular bioscience,
Vol. 11,
No. 6,
pp. 814-820,
June 2011.
Official location
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Takemoto Kazuhiro,
Tatsuya Niwa,
HIDEKI TAGUCHI.
Difference in the distribution pattern of substrate enzymes in the metabolic network of Escherichia coli, according to chaperonin requirement,
BMC systems biology,
Vol. 5,
pp. 98,
June 2011.
Official location
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Tatsuya Niwa,
Bei-Wen Ying,
Katsuyo Saito,
WenZhen Jin,
Shoji Takada,
Takuya Ueda,
HIDEKI TAGUCHI.
Bimodal protein solubility distribution revealed by an aggregation analysis of the entire ensemble of Escherichia coli proteins,
Proceedings of the National Academy of Sciences of the United States of America,
Vol. 106,
No. 11,
pp. 4201-4206,
Mar. 2009.
Official location
Domestic Conference (Reviewed)
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John Clyde Co Soriano,
Daiya Ohara,
Keiji Hirota,
Gen Kondoh,
Tatsuya Niwa,
Tetsuya Kadonosono,
Shinae Kizaka-Kondoh.
Identification of Surface Markers and Functional activities of MDSC-like Adherent Cells (MLAC),
第45回日本分子生物学会年会,
Dec. 2022.
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Kentaro Yamakawa,
Takao Furuki,
Tadaomi Furuta,
Rie Hatanaka,
Takahiro Kikawada,
Tatsuya Niwa,
Hideki Taguchi,
Hiroyuki Furusawa,
Yoshio Okahata,
Minoru Sakurai.
Experimental study on the mechanism underlying the anti-aggregation function of a Group3LEA peptide,
Cryobiol. Cryotech.,
vol. 59,
no. 2,
pp. 95-99,
Oct. 2013.
Domestic Conference (Not reviewed / Unknown)
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Nagatoshi Machii,
Ryo Hatashima,
Haruna Nakamura,
Tatsuya Niwa,
Tatsuki Nagasawa,
Masato Nikaido.
東アフリカ産シクリッドにおける肥大化した唇の分子実態解明,
日本進化学会第27回沼津大会,
Aug. 2022.
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Koki Date,
Thuc Toan Pham,
Tatsuya Niwa,
Taguchi Hideki,
Takafumi Ueno.
Reaction mechanism of pH responsive piston protein assembly,
71st SPSJ Annual Meeting,
May 2022.
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Masahiro Hashimoto,
Takayuki Miki,
Taichi Nakai,
Tatsuya Niwa,
Hisakazu Mihara.
細胞内で自己集合するペプチドタグ開発1:クラスター形成を伴う蛋白質間相互作用解析,
Mar. 2022.
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Nagatoshi Machii,
Ryo Hatashima,
Haruna Nakamura,
Tatsuya Niwa,
HIDEKI TAGUCHI,
Tatsuki Nagasawa,
Masato Nikaido.
マルチオミクス解析で探る「シクリッドの唇肥大化」の平行進化メカニズム,
日本動物学会関東支部第74回大会,
Mar. 2022.
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Tetsuro Yamaguchi,
Kentaro Yamakawa,
Takao Furuki,
Rie Hatanaka,
Hiroyuki Furusawa,
Tatsuya Niwa,
Tadaomi Furuta,
Takahiro Kikawada,
Hideki Taguchi,
Yoshio Okahata,
Minoru Sakurai.
Analysis on the interaction between G3LEA proteins and other proteins by quartz crystal microbalance,
The 52nd Annual Meeting of the Biophysical Society of Japan,
Sept. 2014.
Other Publication
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Tatsuya Niwa,
上田 卓也,
HIDEKI TAGUCHI.
大腸菌全タンパク質の凝集性とシャペロン効果の網羅的な解析,
生物物理,
The Biophysical Society of Japan General Incorporated Association,
Vol. 53,
No. 6,
pp. 309-312,
Nov. 2013.
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Tatsuya Niwa,
HIDEKI TAGUCHI.
網羅的解析から見えてきたタンパク質の凝集特性とシャペロンの役割,
バイオサイエンスとインダストリー = Bioscience & industry,
Vol. 70,
No. 6,
pp. 448-452,
Nov. 2012.
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Tatsuya Niwa,
Ueda T,
Taguchi H.
Comprehensive aggregation analysis of whole E. coli proteins for understanding of protein aggregation,
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme,
Vol. 54,
No. 14,
pp. 1870-1875,
Nov. 2009.
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